Literature DB >> 8117733

Evidence for participation of aspartate-84 as a catalytic group at the active site of porphobilinogen deaminase obtained by site-directed mutagenesis of the hemC gene from Escherichia coli.

S C Woodcock1, P M Jordan.   

Abstract

The role of aspartate-84, an invariant residue in the active site cleft of Escherichia coli porphobilinogen deaminase, has been investigated by site-directed mutagenesis. Substitution of aspartate-84 by glutamate results in an enzyme that retains less than 1% of its activity and which can form highly stable enzyme-intermediate complexes. Substitution of aspartate-84 by either alanine or asparagine, however, results in proteins unable to catalyze the formation of preuroporphyrinogen but which, nevertheless, appear able to assemble the dipyrromethane cofactor. The mechanisms of the tetramerization reaction and cofactor assembly are discussed.

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Year:  1994        PMID: 8117733     DOI: 10.1021/bi00175a043

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

Review 1.  Structure and function of enzymes in heme biosynthesis.

Authors:  Gunhild Layer; Joachim Reichelt; Dieter Jahn; Dirk W Heinz
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

2.  Chlorophyll Biosynthesis.

Authors:  D. Von Wettstein; S. Gough; C. G. Kannangara
Journal:  Plant Cell       Date:  1995-07       Impact factor: 11.277

Review 3.  Porphobilinogen deaminase and uroporphyrinogen III synthase: structure, molecular biology, and mechanism.

Authors:  P M Shoolingin-Jordan
Journal:  J Bioenerg Biomembr       Date:  1995-04       Impact factor: 2.945

4.  Discovery that the assembly of the dipyrromethane cofactor of porphobilinogen deaminase holoenzyme proceeds initially by the reaction of preuroporphyrinogen with the apoenzyme.

Authors:  P M Shoolingin-Jordan; M J Warren; S J Awan
Journal:  Biochem J       Date:  1996-06-01       Impact factor: 3.857

5.  Role of aspartate 400, arginine 262, and arginine 401 in the catalytic mechanism of human coproporphyrinogen oxidase.

Authors:  Jason R Stephenson; Julie A Stacey; Justin B Morgenthaler; Jon A Friesen; Timothy D Lash; Marjorie A Jones
Journal:  Protein Sci       Date:  2007-01-22       Impact factor: 6.725

6.  Structural studies of domain movement in active-site mutants of porphobilinogen deaminase from Bacillus megaterium.

Authors:  Jingxu Guo; Peter Erskine; Alun R Coker; Steve P Wood; Jonathan B Cooper
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-10-30       Impact factor: 1.056

Review 7.  Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.

Authors:  Harry A Dailey; Tamara A Dailey; Svetlana Gerdes; Dieter Jahn; Martina Jahn; Mark R O'Brian; Martin J Warren
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-25       Impact factor: 11.056

8.  Purification and properties of porphobilinogen deaminase from Arabidopsis thaliana.

Authors:  R M Jones; P M Jordan
Journal:  Biochem J       Date:  1994-05-01       Impact factor: 3.857

9.  Structural basis for tetrapyrrole coordination by uroporphyrinogen decarboxylase.

Authors:  John D Phillips; Frank G Whitby; James P Kushner; Christopher P Hill
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

10.  The common origins of the pigments of life-early steps of chlorophyll biosynthesis.

Authors:  Y J Avissar; P A Moberg
Journal:  Photosynth Res       Date:  1995-06       Impact factor: 3.573

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