Literature DB >> 19177179

The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery.

Thomas O Metz1, Qibin Zhang, Jason S Page, Yufeng Shen, Stephen J Callister, Jon M Jacobs, Richard D Smith.   

Abstract

The future utility of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discover will be discussed, beginning with a brief description of the evolution of metabolomics and the utilization of the three most popular analytical platforms in such studies: NMR, GC-MS, and LC-MS. Emphasis is placed on recent developments in high-efficiency LC separations, sensitive electrospray ionization approaches, and the benefits to incorporating both in LC-MS-based approaches. The advantages and disadvantages of various quantitative approaches are reviewed, followed by the current LC-MS-based tools available for candidate biomarker characterization and identification. Finally, a brief prediction on the future path of LC-MS-based methods in metabolic profiling and metabolomic studies is given.

Year:  2007        PMID: 19177179      PMCID: PMC2631423          DOI: 10.2217/17520363.1.1.159

Source DB:  PubMed          Journal:  Biomark Med        ISSN: 1752-0363            Impact factor:   2.851


  144 in total

Review 1.  Comprehensive two-dimensional gas chromatography: a powerful and versatile analytical tool.

Authors:  Jens Dallüge; Jan Beens; Udo A Th Brinkman
Journal:  J Chromatogr A       Date:  2003-06-06       Impact factor: 4.759

Review 2.  Application of comprehensive two-dimensional gas chromatography to drugs analysis in doping control.

Authors:  A J Kueh; P J Marriott; P M Wynne; J H Vine
Journal:  J Chromatogr A       Date:  2003-06-06       Impact factor: 4.759

Review 3.  Comprehensive multi-dimensional liquid chromatographic separation in biomedical and pharmaceutical analysis: a review.

Authors:  Steven P Dixon; Ian D Pitfield; David Perrett
Journal:  Biomed Chromatogr       Date:  2006 Jun-Jul       Impact factor: 1.902

4.  Ionizable isotopic labeling reagent for relative quantification of amine metabolites by mass spectrometry.

Authors:  Michael R Shortreed; Shane M Lamos; Brian L Frey; Margaret F Phillips; Madhusudan Patel; Peter J Belshaw; Lloyd M Smith
Journal:  Anal Chem       Date:  2006-09-15       Impact factor: 6.986

5.  Ion formation from charged droplets: Roles of geometry, energy, and time.

Authors:  J B Fenn
Journal:  J Am Soc Mass Spectrom       Date:  1993-07       Impact factor: 3.109

6.  Characterization of mycobacteria species by HPLC and pattern recognition.

Authors:  L S Ramos
Journal:  J Chromatogr Sci       Date:  1994-06       Impact factor: 1.618

7.  Identification of uncommon plant metabolites based on calculation of elemental compositions using gas chromatography and quadrupole mass spectrometry.

Authors:  O Fiehn; J Kopka; R N Trethewey; L Willmitzer
Journal:  Anal Chem       Date:  2000-08-01       Impact factor: 6.986

8.  Subfemtomole MS and MS/MS peptide sequence analysis using nano-HPLC micro-ESI fourier transform ion cyclotron resonance mass spectrometry.

Authors:  S E Martin; J Shabanowitz; D F Hunt; J A Marto
Journal:  Anal Chem       Date:  2000-09-15       Impact factor: 6.986

9.  Metabolic profiling of saponins in Medicago sativa and Medicago truncatula using HPLC coupled to an electrospray ion-trap mass spectrometer.

Authors:  David V Huhman; Lloyd W Sumner
Journal:  Phytochemistry       Date:  2002-02       Impact factor: 4.072

Review 10.  Modern developments in gas chromatography-mass spectrometry-based environmental analysis.

Authors:  F J Santos; M T Galceran
Journal:  J Chromatogr A       Date:  2003-06-06       Impact factor: 4.759

View more
  24 in total

Review 1.  Stable isotope-resolved metabolomics and applications for drug development.

Authors:  Teresa W-M Fan; Pawel K Lorkiewicz; Katherine Sellers; Hunter N B Moseley; Richard M Higashi; Andrew N Lane
Journal:  Pharmacol Ther       Date:  2011-12-23       Impact factor: 12.310

2.  In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids.

Authors:  Lars J Kangas; Thomas O Metz; Giorgis Isaac; Brian T Schrom; Bojana Ginovska-Pangovska; Luning Wang; Li Tan; Robert R Lewis; John H Miller
Journal:  Bioinformatics       Date:  2012-05-15       Impact factor: 6.937

3.  High Resolution Separations and Improved Ion Production and Transmission in Metabolomics.

Authors:  Thomas O Metz; Jason S Page; Erin S Baker; Keqi Tang; Jie Ding; Yufeng Shen; Richard D Smith
Journal:  Trends Analyt Chem       Date:  2008-03       Impact factor: 12.296

4.  Metabolomic analysis and visualization engine for LC-MS data.

Authors:  Eugene Melamud; Livia Vastag; Joshua D Rabinowitz
Journal:  Anal Chem       Date:  2010-11-04       Impact factor: 6.986

Review 5.  Mass Spectrometry-based Metabolomics in Translational Research.

Authors:  Su Jung Kim; Ha Eun Song; Hyo Yeong Lee; Hyun Ju Yoo
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

6.  A Statistical Analysis of the Effects of Urease Pre-treatment on the Measurement of the Urinary Metabolome by Gas Chromatography-Mass Spectrometry.

Authors:  Bobbie-Jo Webb-Robertson; Young-Mo Kim; Erika M Zink; Katherine A Hallaian; Qibin Zhang; Ramana Madupu; Katrina M Waters; Thomas O Metz
Journal:  Metabolomics       Date:  2014-10-01       Impact factor: 4.290

Review 7.  Applications of NMR spectroscopy to systems biochemistry.

Authors:  Teresa W-M Fan; Andrew N Lane
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-02-06       Impact factor: 9.795

8.  Sample preparation of Mycobacterium tuberculosis extracts for nuclear magnetic resonance metabolomic studies.

Authors:  Denise K Zinniel; Robert J Fenton; Steven Halouska; Robert Powers; Raul G Barletta
Journal:  J Vis Exp       Date:  2012-09-03       Impact factor: 1.355

9.  A statistically rigorous test for the identification of parent-fragment pairs in LC-MS datasets.

Authors:  Andreas Ipsen; Elizabeth J Want; John C Lindon; Timothy M D Ebbels
Journal:  Anal Chem       Date:  2010-03-01       Impact factor: 6.986

10.  New sample preparation approach for mass spectrometry-based profiling of plasma results in improved coverage of metabolome.

Authors:  Yanhui Yang; Charmion Cruickshank; Michael Armstrong; Spencer Mahaffey; Rick Reisdorph; Nichole Reisdorph
Journal:  J Chromatogr A       Date:  2013-04-18       Impact factor: 4.759

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.