Literature DB >> 11106173

Role of a solvent-exposed aromatic cluster in the folding of Escherichia coli CspA.

H M Rodriguez1, D M Vu, L M Gregoret.   

Abstract

Escherichia coli CspA is a member of the cold shock protein family. All cold shock proteins studied to date fold rapidly by an apparent two-state mechanism. CspA contains an unusual cluster of aromatic amino acids on its surface that is necessary for nucleic acid binding and also provides stability to CspA (Hillier et al., 1998). To elucidate the role this aromatic cluster plays in the determining the folding rate and pathway of CspA, we have studied the folding kinetics of mutants containing either leucine or serine substituted for Phe 18, Phe20, and/or Phe31. The leucine substitutions are found to accelerate folding and the serine substitutions to decelerate folding. Because these residues exert effects on the free energy of the folding transition state, they may be necessary for nucleating folding. They are not responsible, however, for the very compact, native-like transition state ensemble seen in the cold shock proteins, as the refolding rates of the mutants all show a similar, weak dependence of unfolding rate on denaturant concentration. Using mutant cycle analysis, we show that there is energetic coupling among the three residues between the unfolded and transition states, suggesting that the cooperative nature of these interactions helps to determine the unfolding rate. Overall, our results suggest that separate evolutionary pressures can act simultaneously on the same group of residues to maintain function, stability, and folding rate.

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Year:  2000        PMID: 11106173      PMCID: PMC2144470          DOI: 10.1110/ps.9.10.1993

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  40 in total

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Authors:  H Zhu; W Braun
Journal:  Protein Sci       Date:  1999-02       Impact factor: 6.725

Review 2.  The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding.

Authors:  A R Fersht; A Matouschek; L Serrano
Journal:  J Mol Biol       Date:  1992-04-05       Impact factor: 5.469

3.  Conserved structural features on protein surfaces: small exterior hydrophobic clusters.

Authors:  L C Tisi; P A Evans
Journal:  J Mol Biol       Date:  1995-06-02       Impact factor: 5.469

4.  How does a protein fold?

Authors:  A Sali; E Shakhnovich; M Karplus
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

5.  A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

Authors:  C K Smith; J M Withka; L Regan
Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

6.  Measurement of the beta-sheet-forming propensities of amino acids.

Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1994-02-17       Impact factor: 49.962

7.  Context is a major determinant of beta-sheet propensity.

Authors:  D L Minor; P S Kim
Journal:  Nature       Date:  1994-09-15       Impact factor: 49.962

8.  Specific nucleus as the transition state for protein folding: evidence from the lattice model.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  Biochemistry       Date:  1994-08-23       Impact factor: 3.162

9.  Crystal structure of CspA, the major cold shock protein of Escherichia coli.

Authors:  H Schindelin; W Jiang; M Inouye; U Heinemann
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-24       Impact factor: 11.205

10.  Folded proteins occur frequently in libraries of random amino acid sequences.

Authors:  A R Davidson; R T Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  1994-03-15       Impact factor: 11.205

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  12 in total

1.  Is there an en route folding intermediate for Cold shock proteins?

Authors:  Lei Huang; Eugene I Shakhnovich
Journal:  Protein Sci       Date:  2012-03-29       Impact factor: 6.725

2.  Investigation of an anomalously accelerating substitution in the folding of a prototypical two-state protein.

Authors:  Camille Lawrence; Jennifer Kuge; Kareem Ahmad; Kevin W Plaxco
Journal:  J Mol Biol       Date:  2010-09-15       Impact factor: 5.469

3.  Examination of the folding of E. coli CspA through tryptophan substitutions.

Authors:  D M Vu; K L Reid; H M Rodriguez; L M Gregoret
Journal:  Protein Sci       Date:  2001-10       Impact factor: 6.725

4.  A conserved and buried edge-to-face aromatic interaction in small ubiquitin-like modifier (SUMO) has a role in SUMO stability and function.

Authors:  Kiran Sankar Chatterjee; Vasvi Tripathi; Ranabir Das
Journal:  J Biol Chem       Date:  2019-03-01       Impact factor: 5.157

5.  The effect of context on the folding of β-hairpins.

Authors:  Amanda L Jonsson; Valerie Daggett
Journal:  J Struct Biol       Date:  2011-08-06       Impact factor: 2.867

6.  Contributions of aromatic pairs to the folding and stability of long-lived human γD-crystallin.

Authors:  Fanrong Kong; Jonathan King
Journal:  Protein Sci       Date:  2011-03       Impact factor: 6.725

7.  Early turn formation and chain collapse drive fast folding of the major cold shock protein CspA of Escherichia coli.

Authors:  Dung M Vu; Scott H Brewer; R Brian Dyer
Journal:  Biochemistry       Date:  2012-11-01       Impact factor: 3.162

8.  The critical role of N- and C-terminal contact in protein stability and folding of a family 10 xylanase under extreme conditions.

Authors:  Amit Bhardwaj; Sadhu Leelavathi; Sudeshna Mazumdar-Leighton; Amit Ghosh; Suryanarayanarao Ramakumar; Vanga S Reddy
Journal:  PLoS One       Date:  2010-06-28       Impact factor: 3.240

9.  The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets.

Authors:  Ivan L Budyak; Anastasia Zhuravleva; Lila M Gierasch
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

10.  A segment of cold shock protein directs the folding of a combinatorial protein.

Authors:  Stephanie de Bono; Lutz Riechmann; Eric Girard; Roger L Williams; Greg Winter
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-25       Impact factor: 11.205

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