Literature DB >> 8085918

Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds.

W Liesack1, F Bak, J U Kreft, E Stackebrandt.   

Abstract

A polyphasic approach was used in which genotypic and phenotypic properties of a gram-negative, obligately anaerobic, rod-shaped bacterium isolated from a black anoxic freshwater mud sample were determined. Based on these results, the name Holophaga foetida gen. nov., sp. nov. is proposed. This microorganism produced dimethylsulfide and methanethiol during growth on trimethoxybenzoate or syringate. The only other compounds utilized were pyruvate and trihydroxybenzenes such as gallate, phloroglucinol, or pyrogallol. The aromatic compounds were degraded to acetate. Although comparison of the signature nucleotide pattern of the five established subclasses of Proteobacteria with the 16S rDNA sequence of Holophaga foetida revealed a relationship to members of the delta-subclass, the phylogenetic position within the radiation of this class is so deep and dependent upon the number and selection of reference sequences that its affiliation to the Proteobacteria must be considered tentative. The type strain is H. foetida strain TMBS4 (DSM 6591).

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Year:  1994        PMID: 8085918     DOI: 10.1007/bf00264378

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  7 in total

1.  PCR amplification of 16S rDNA from lyophilized cell cultures facilitates studies in molecular systematics.

Authors:  J D Wisotzkey; P Jurtshuk; G E Fox
Journal:  Curr Microbiol       Date:  1990       Impact factor: 2.188

2.  Variables influencing results, and the precise definition of steps in gram staining as a means of standardizing the results obtained.

Authors:  J W BARTHOLOMEW
Journal:  Stain Technol       Date:  1962-05

3.  Evolutionary relationships among sulfur- and iron-oxidizing eubacteria.

Authors:  D J Lane; A P Harrison; D Stahl; B Pace; S J Giovannoni; G J Olsen; N R Pace
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

4.  A rapid method for the base ratio determination of bacterial DNA.

Authors:  P Cashion; M A Holder-Franklin; J McCully; M Franklin
Journal:  Anal Biochem       Date:  1977-08       Impact factor: 3.365

5.  Minimization of variation in the response to different proteins of the Coomassie blue G dye-binding assay for protein.

Authors:  S M Read; D H Northcote
Journal:  Anal Biochem       Date:  1981-09-01       Impact factor: 3.365

6.  Pyrogallol-to-phloroglucinol conversion and other hydroxyl-transfer reactions catalyzed by cell extracts of Pelobacter acidigallici.

Authors:  A Brune; B Schink
Journal:  J Bacteriol       Date:  1990-02       Impact factor: 3.490

7.  Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments.

Authors:  B M Goebel; E Stackebrandt
Journal:  Appl Environ Microbiol       Date:  1994-05       Impact factor: 4.792

  7 in total
  42 in total

1.  Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.

Authors:  Peter H Janssen; Penelope S Yates; Bronwyn E Grinton; Paul M Taylor; Michelle Sait
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  13,16-Dimethyl octacosanedioic acid (iso-diabolic acid), a common membrane-spanning lipid of Acidobacteria subdivisions 1 and 3.

Authors:  Jaap S Sinninghe Damsté; W Irene C Rijpstra; Ellen C Hopmans; Johan W H Weijers; Bärbel U Foesel; Jörg Overmann; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2011-04-22       Impact factor: 4.792

3.  A census of rRNA genes and linked genomic sequences within a soil metagenomic library.

Authors:  Mark R Liles; Brian F Manske; Scott B Bintrim; Jo Handelsman; Robert M Goodman
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

4.  Acidobacteria in freshwater ponds at Doñana National Park, Spain.

Authors:  Johannes Zimmermann; M Carmen Portillo; Laura Serrano; Wolfgang Ludwig; Juan M Gonzalez
Journal:  Microb Ecol       Date:  2011-12-15       Impact factor: 4.552

5.  Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.

Authors:  Isabelle F George; Manuela Hartmann; Mark R Liles; Spiros N Agathos
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

6.  Linking Microbial Community and Catabolic Gene Structures during the Adaptation of Three Contaminated Soils under Continuous Long-Term Pollutant Stress.

Authors:  Daiana Lima-Morales; Ruy Jáuregui; Amelia Camarinha-Silva; Robert Geffers; Dietmar H Pieper; Ramiro Vilchez-Vargas
Journal:  Appl Environ Microbiol       Date:  2016-02-05       Impact factor: 4.792

Review 7.  Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes.

Authors:  Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

8.  Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.

Authors:  Colleen M Hansel; Scott Fendorf; Phillip M Jardine; Christopher A Francis
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

9.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

Review 10.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

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