Literature DB >> 8079987

Multipoint mapping calculations for sperm-typing data.

L C Lazzeroni1, N Arnheim, K Schmitt, K Lange.   

Abstract

This paper explains how multipoint likelihoods can be computed for sperm-typing data. Experimental errors such as multiple sperm per tube, inadequate amplification, and contamination by exogenous DNA are explicitly taken into account. By limiting the number of sperm theoretically possible per tube to a predetermined maximum and by assuming no chiasma interference, maximum-likelihood estimation can be carried out rapidly using the theory of hidden Markov chains.

Mesh：

Year:  1994        PMID： 8079987      PMCID： PMC1918392     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


  10 in total

1.  Whole genome amplification from a single cell: implications for genetic analysis.

Authors:  L Zhang; X Cui; K Schmitt; R Hubert; W Navidi; N Arnheim
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

2.  Trials, tribulations, and triumphs of the EM algorithm in pedigree analysis.

Authors:  D E Weeks; K Lange
Journal:  IMA J Math Appl Med Biol       Date:  1989

3.  Programs for Pedigree Analysis: MENDEL, FISHER, and dGENE.

Authors:  K Lange; D Weeks; M Boehnke
Journal:  Genet Epidemiol       Date:  1988       Impact factor: 2.135

4.  Multilocus ordering strategies based on sperm typing.

Authors:  T M Goradia; K Lange
Journal:  Ann Hum Genet       Date:  1990-01       Impact factor: 1.670

5.  Single-sperm typing: determination of genetic distance between the G gamma-globin and parathyroid hormone loci by using the polymerase chain reaction and allele-specific oligomers.

Authors:  X F Cui; H H Li; T M Goradia; K Lange; H H Kazazian; D Galas; N Arnheim
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

6.  Amplification and analysis of DNA sequences in single human sperm and diploid cells.

Authors:  H H Li; U B Gyllensten; X F Cui; R K Saiki; H A Erlich; N Arnheim
Journal:  Nature       Date:  1988-09-29       Impact factor: 49.962

7.  Ordering three DNA polymorphisms on human chromosome 3 by sperm typing.

Authors:  T M Goradia; V P Stanton; X F Cui; H Aburatani; H H Li; K Lange; D E Housman; N Arnheim
Journal:  Genomics       Date:  1991-07       Impact factor: 5.736

8.  Analysis of four microsatellite markers on the long arm of chromosome 9 by meiotic recombination in flow-sorted single sperm.

Authors:  R A Furlong; D R Goudie; N P Carter; J E Lyall; N A Affara; M A Ferguson-Smith
Journal:  Am J Hum Genet       Date:  1993-06       Impact factor: 11.025

9.  Multipoint linkage map of the human pseudoautosomal region, based on single-sperm typing: do double crossovers occur during male meiosis?

Authors:  K Schmitt; L C Lazzeroni; S Foote; D Vollrath; E M Fisher; T M Goradia; K Lange; D C Page; N Arnheim
Journal:  Am J Hum Genet       Date:  1994-09       Impact factor: 11.025

10.  Fine-structure genetic mapping of human chromosomes using the polymerase chain reaction on single sperm: experimental design considerations.

Authors:  M Boehnke; N Arnheim; H Li; F S Collins
Journal:  Am J Hum Genet       Date:  1989-07       Impact factor: 11.025
  10 in total
  10 in total

1.  SPERMSEG: analysis of segregation distortion in single-sperm data.

Authors:  M S McPeek
Journal:  Am J Hum Genet       Date:  1999-10       Impact factor: 11.025

2.  Constructing the parental linkage phase and the genetic map over distances <1 cM using pooled haploid DNA.

Authors:  Dario Gasbarra; Mikko J Sillanpää
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

3.  High-resolution patterns of meiotic recombination across the human major histocompatibility complex.

Authors:  Michael Cullen; Stephen P Perfetto; William Klitz; George Nelson; Mary Carrington
Journal:  Am J Hum Genet       Date:  2002-09-23       Impact factor: 11.025

4.  Genetic analysis of meiotic recombination in humans by use of sperm typing: reduced recombination within a heterozygous paracentric inversion of chromosome 9q32-q34.3.

Authors:  G M Brown; M Leversha; M Hulten; M A Ferguson-Smith; N A Affara; R A Furlong
Journal:  Am J Hum Genet       Date:  1998-06       Impact factor: 11.025

5.  Multipoint linkage map of the human pseudoautosomal region, based on single-sperm typing: do double crossovers occur during male meiosis?

Authors:  K Schmitt; L C Lazzeroni; S Foote; D Vollrath; E M Fisher; T M Goradia; K Lange; D C Page; N Arnheim
Journal:  Am J Hum Genet       Date:  1994-09       Impact factor: 11.025

6.  The behavior of meiosis in sperm.

Authors:  A Chakravarti
Journal:  Am J Hum Genet       Date:  1994-09       Impact factor: 11.025

7.  Evidence for heterogeneity in recombination in the human pseudoautosomal region: high resolution analysis by sperm typing and radiation-hybrid mapping.

Authors:  S Lien; J Szyda; B Schechinger; G Rappold; N Arnheim
Journal:  Am J Hum Genet       Date:  2000-02       Impact factor: 11.025

8.  Absence of age effect on meiotic recombination between human X and Y chromosomes.

Authors:  Qinghua Shi; Elizabeth Spriggs; L Leigh Field; Alfred Rademaker; Evelyn Ko; Leona Barclay; Renée H Martin
Journal:  Am J Hum Genet       Date:  2002-06-03       Impact factor: 11.025

9.  Analysis of meiotic segregation, using single-sperm typing: meiotic drive at the myotonic dystrophy locus.

Authors:  E P Leeflang; M S McPeek; N Arnheim
Journal:  Am J Hum Genet       Date:  1996-10       Impact factor: 11.025

10.  Individual variation in recombination among human males.

Authors:  J Yu; L Lazzeroni; J Qin; M M Huang; W Navidi; H Erlich; N Arnheim
Journal:  Am J Hum Genet       Date:  1996-12       Impact factor: 11.025
  10 in total

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