Literature DB >> 8069218

Structural characteristics and stabilizing principles of bent beta-strands in protein tertiary architectures.

C Daffner1, G Chelvanayagam, P Argos.   

Abstract

beta-Strands as constituents of beta-pleated sheets in protein tertiary structures often display considerable distortion from a purely extended conformation. The dislocation types are often characterized as "bulging," "twisting," and "bending." The former 2 properties have been extensively studied and classified. In this work an investigation of bent beta-structures is undertaken. The structural characteristics examined included the bending angles within and out of the principal strand plane, their distribution among various strand types such as parallel and antiparallel, the amino acid preferences at bend sites, and the usage of charged and polar residues for stabilization through interactive anchoring with other atoms of the beta-sheet within which the bent strand lies.

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Year:  1994        PMID: 8069218      PMCID: PMC2142876          DOI: 10.1002/pro.5560030602

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  10 in total

1.  Anatomy and evolution of proteins displaying the viral capsid jellyroll topology.

Authors:  G Chelvanayagam; J Heringa; P Argos
Journal:  J Mol Biol       Date:  1992-11-05       Impact factor: 5.469

2.  OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.

Authors:  J Heringa; H Sommerfeldt; D Higgins; P Argos
Journal:  Comput Appl Biosci       Date:  1992-12

3.  Relative orientation of close-packed beta-pleated sheets in proteins.

Authors:  C Chothia; J Janin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-07       Impact factor: 11.205

4.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

5.  New domain motif: the structure of pectate lyase C, a secreted plant virulence factor.

Authors:  M D Yoder; N T Keen; F Jurnak
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

6.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

7.  Orthogonal packing of beta-pleated sheets in proteins.

Authors:  C Chothia; J Janin
Journal:  Biochemistry       Date:  1982-08-17       Impact factor: 3.162

8.  Protein secondary structure. Studies on the limits of prediction accuracy.

Authors:  J Palau; P Argos; P Puigdomenech
Journal:  Int J Pept Protein Res       Date:  1982-04

9.  Crystallographic refinement of human serum retinol binding protein at 2A resolution.

Authors:  S W Cowan; M E Newcomer; T A Jones
Journal:  Proteins       Date:  1990

10.  Molecular structure of the bilin binding protein (BBP) from Pieris brassicae after refinement at 2.0 A resolution.

Authors:  R Huber; M Schneider; I Mayr; R Müller; R Deutzmann; F Suter; H Zuber; H Falk; H Kayser
Journal:  J Mol Biol       Date:  1987-12-05       Impact factor: 5.469

  10 in total
  3 in total

1.  Initial conformational changes of human transthyretin under partially denaturing conditions.

Authors:  Mingfeng Yang; Ming Lei; Rafael Bruschweiler; Shuanghong Huo
Journal:  Biophys J       Date:  2005-04-08       Impact factor: 4.033

2.  An amino acid code for β-sheet packing structure.

Authors:  Hyun Joo; Jerry Tsai
Journal:  Proteins       Date:  2014-04-16

Review 3.  Folding by numbers: primary sequence statistics and their use in studying protein folding.

Authors:  Brent Wathen; Zongchao Jia
Journal:  Int J Mol Sci       Date:  2009-04-08       Impact factor: 6.208

  3 in total

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