Literature DB >> 1468020

OBSTRUCT: a program to obtain largest cliques from a protein sequence set according to structural resolution and sequence similarity.

J Heringa1, H Sommerfeldt, D Higgins, P Argos.   

Abstract

A program OBSTRUCT has been developed to obtain the largest possible subset according to specific constraints from a set of protein sequences whose tertiary structures have been determined crystallographically. The user can request a range in sequence similarity level and/or structural resolution. The program optionally includes sequences with known three-dimensional folds elicited from NMR data.

Mesh：

Year:  1992        PMID： 1468020     DOI： 10.1093/bioinformatics/8.6.599

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  6 in total

1.  The ASTRAL compendium for protein structure and sequence analysis.

Authors:  S E Brenner; P Koehl; M Levitt
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures.

Authors:  F Eisenhaber
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

Review 3.  Protein-protein crystal-packing contacts.

Authors:  O Carugo; P Argos
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

4.  Bayesian statistical analysis of protein side-chain rotamer preferences.

Authors:  R L Dunbrack; F E Cohen
Journal:  Protein Sci       Date:  1997-08       Impact factor: 6.725

5.  Comparison of atomic solvation parametric sets: applicability and limitations in protein folding and binding.

Authors:  A H Juffer; F Eisenhaber; S J Hubbard; D Walther; P Argos
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

6.  Structural characteristics and stabilizing principles of bent beta-strands in protein tertiary architectures.

Authors:  C Daffner; G Chelvanayagam; P Argos
Journal:  Protein Sci       Date:  1994-06       Impact factor: 6.725
  6 in total

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