Literature DB >> 8040317

A novel mobile element inserted in the alpha spectrin gene: spectrin dayton. A truncated alpha spectrin associated with hereditary elliptocytosis.

H Hassoun1, T L Coetzer, J N Vassiliadis, K E Sahr, G J Maalouf, S T Saad, L Catanzariti, J Palek.   

Abstract

Nonviral retrotransposons, retropseudogenes, and short interspersed nuclear elements (SINEs) are mobile DNA segments capable of transposition to new genomic locations, where they may alter gene expression. De novo integration into specific genes has been described in both germ and somatic cells. We report a family with hereditary elliptocytosis and pyropoikilocytosis associated with a truncated alpha-spectrin protein. We present the biochemical characteristics of this abnormal protein and show that the alpha-spectrin gene is disrupted by a mobile element resulting in exon skipping. This element causes duplication of the insertion site and is terminated by a long poly-A tail downstream of multiple consensus polyadenylation signals. Southern blot analysis of human genomic DNA, using this element as probe, reveals one to three copies per individual. This element has no homology to any previously reported sequence and therefore appears to be a member of a novel family of mobile elements.

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Year:  1994        PMID: 8040317      PMCID: PMC296141          DOI: 10.1172/JCI117380

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  42 in total

1.  DNA in heritable disease.

Authors:  B C Sykes
Journal:  Lancet       Date:  1983-10-01       Impact factor: 79.321

2.  DNA analysis in the diagnosis of hemoglobin disorders.

Authors:  M Goossens; Y Y Kan
Journal:  Methods Enzymol       Date:  1981       Impact factor: 1.600

3.  A structural model of human erythrocyte spectrin. Alignment of chemical and functional domains.

Authors:  D W Speicher; J S Morrow; W J Knowles; V T Marchesi
Journal:  J Biol Chem       Date:  1982-08-10       Impact factor: 5.157

4.  Erythrocyte spectrin is comprised of many homologous triple helical segments.

Authors:  D W Speicher; V T Marchesi
Journal:  Nature       Date:  1984 Sep 13-19       Impact factor: 49.962

5.  The molecular structure of human erythrocyte spectrin. Biophysical and electron microscopic studies.

Authors:  D M Shotton; B E Burke; D Branton
Journal:  J Mol Biol       Date:  1979-06-25       Impact factor: 5.469

6.  A molecular defect of spectrin in a subset of patients with hereditary elliptocytosis. Alterations in the alpha-subunit domain involved in spectrin self-association.

Authors:  J Lawler; S C Liu; J Palek; J Prchal
Journal:  J Clin Invest       Date:  1984-06       Impact factor: 14.808

7.  Altered spectrin dimer-dimer association and instability of erythrocyte membrane skeletons in hereditary pyropoikilocytosis.

Authors:  S C Liu; J Palek; J Prchal; R P Castleberry
Journal:  J Clin Invest       Date:  1981-09       Impact factor: 14.808

8.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

9.  Alu sequences are processed 7SL RNA genes.

Authors:  E Ullu; C Tschudi
Journal:  Nature       Date:  1984 Nov 8-14       Impact factor: 49.962

10.  Defining the beginning and end of KpnI family segments.

Authors:  G Grimaldi; J Skowronski; M F Singer
Journal:  EMBO J       Date:  1984-08       Impact factor: 11.598

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  18 in total

1.  Retrotransposition of marked SVA elements by human L1s in cultured cells.

Authors:  Dustin C Hancks; John L Goodier; Prabhat K Mandal; Ling E Cheung; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2011-06-02       Impact factor: 6.150

2.  Polymorphic SVA retrotransposons at four loci and their association with classical HLA class I alleles in Japanese, Caucasians and African Americans.

Authors:  Jerzy K Kulski; Atsuko Shigenari; Hidetoshi Inoko
Journal:  Immunogenetics       Date:  2010-02-20       Impact factor: 2.846

3.  Roles of retrotransposons in benign and malignant hematologic disease.

Authors:  Anna M Schneider; Amy S Duffield; David E Symer; Kathleen H Burns
Journal:  Cellscience       Date:  2009-10-27

4.  Discrete subcellular partitioning of human retrotransposon RNAs despite a common mechanism of genome insertion.

Authors:  John L Goodier; Prabhat K Mandal; Lili Zhang; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2010-02-10       Impact factor: 6.150

Review 5.  A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease.

Authors:  Jian-Min Chen; Peter D Stenson; David N Cooper; Claude Férec
Journal:  Hum Genet       Date:  2005-06-28       Impact factor: 4.132

6.  Natural genetic variation caused by transposable elements in humans.

Authors:  E Andrew Bennett; Laura E Coleman; Circe Tsui; W Stephen Pittard; Scott E Devine
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

Review 7.  SVA retrotransposons: Evolution and genetic instability.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Semin Cancer Biol       Date:  2010-04-21       Impact factor: 15.707

8.  Exon-trapping mediated by the human retrotransposon SVA.

Authors:  Dustin C Hancks; Adam D Ewing; Jesse E Chen; Katsushi Tokunaga; Haig H Kazazian
Journal:  Genome Res       Date:  2009-07-27       Impact factor: 9.043

9.  SVA elements are nonautonomous retrotransposons that cause disease in humans.

Authors:  Eric M Ostertag; John L Goodier; Yue Zhang; Haig H Kazazian
Journal:  Am J Hum Genet       Date:  2003-11-19       Impact factor: 11.025

Review 10.  The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.

Authors:  Sandra R Richardson; Aurélien J Doucet; Huira C Kopera; John B Moldovan; José Luis Garcia-Perez; John V Moran
Journal:  Microbiol Spectr       Date:  2015-04
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