Literature DB >> 8019865

Predicting protein function: a versatile tool for the Apple Macintosh.

R Fuchs1.   

Abstract

A tool is presented that helps to find biological functions for new protein sequences. Running on any Macintosh computer system, MacPattern provides a unique combination of different algorithms, speed and user-friendliness. It supports searches for protein patterns using the PROSITE database, protein block searches with the BLOCKS database, and the identification of statistically significant protein segments. MacPattern allows batch processing of sequences and automatic translations of nucleotide sequence data. It is particularly suited for genome analysis or cDNA sequencing projects.

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Year:  1994        PMID： 8019865     DOI： 10.1093/bioinformatics/10.2.171

Source DB:  PubMed          Journal:  Comput Appl Biosci        ISSN： 0266-7061


  9 in total

1.  Molecular cloning of the human UMP synthase gene and characterization of point mutations in two hereditary orotic aciduria families.

Authors:  M Suchi; H Mizuno; Y Kawai; T Tsuboi; S Sumi; K Okajima; M E Hodgson; H Ogawa; Y Wada
Journal:  Am J Hum Genet       Date:  1997-03       Impact factor: 11.025

2.  Mediation of NGF signaling by post-translational inhibition of HES-1, a basic helix-loop-helix repressor of neuronal differentiation.

Authors:  A Ström; P Castella; J Rockwood; J Wagner; M Caudy
Journal:  Genes Dev       Date:  1997-12-01       Impact factor: 11.361

3.  Prediction and Fourier-transform infrared-spectroscopy estimation of the secondary structure of a recombinant beta-glucosidase from Streptomyces sp. (ATCC 11238).

Authors:  J A Perez-Pons; E Padros; E Querol
Journal:  Biochem J       Date:  1995-06-15       Impact factor: 3.857

4.  Finding flexible patterns in unaligned protein sequences.

Authors:  I Jonassen; J F Collins; D G Higgins
Journal:  Protein Sci       Date:  1995-08       Impact factor: 6.725

5.  PROSITE: recent developments.

Authors:  A Bairoch; P Bucher
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

6.  Salmonella typhimurium encodes a putative iron transport system within the centisome 63 pathogenicity island.

Authors:  D Zhou; W D Hardt; J E Galán
Journal:  Infect Immun       Date:  1999-04       Impact factor: 3.441

7.  Cloning, analysis, and overexpression of the gene encoding isobutylamine N-hydroxylase from the valanimycin producer, Streptomyces viridifaciens.

Authors:  R J Parry; W Li; H N Cooper
Journal:  J Bacteriol       Date:  1997-01       Impact factor: 3.490

8.  Inhibition of human cytomegalovirus DNA maturation by a benzimidazole ribonucleoside is mediated through the UL89 gene product.

Authors:  M R Underwood; R J Harvey; S C Stanat; M L Hemphill; T Miller; J C Drach; L B Townsend; K K Biron
Journal:  J Virol       Date:  1998-01       Impact factor: 5.103

9.  Comparative transcriptome profiling approach to glean virulence and immunomodulation-related genes of Fasciola hepatica.

Authors:  Orçun Haçarız; Mete Akgün; Pınar Kavak; Bayram Yüksel; Mahmut Şamil Sağıroğlu
Journal:  BMC Genomics       Date:  2015-05-09       Impact factor: 3.969
  9 in total

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