Literature DB >> 8019409

Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and protein-DNA complexes by multidimensional heteronuclear NMR.

G M Clore1, A M Gronenborn.   

Abstract

The recent development of a whole panoply of multidimensional heteronuclear-edited and -filtered NMR experiments has revolutionized the field of protein structure determination by NMR, making it possible to extend the methodology from the 10-kDa limit of conventional 2-dimensional NMR to systems up to potentially 35-40 kDa. The basic strategy for solving 3-dimensional structures of larger proteins and protein-ligand complexes in solution using 3- and 4-dimensional NMR spectroscopy is summarized, and the power of these methods is illustrated using 3 examples: interleukin-1 beta, the complex of calmodulin with a target peptide, and the specific complex of the transcription factor GATA-1 with its cognate DNA target site.

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Year:  1994        PMID: 8019409      PMCID: PMC2142707          DOI: 10.1002/pro.5560030302

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  54 in total

1.  Evidence for domain organization within the 61-kDa calmodulin-dependent cyclic nucleotide phosphodiesterase from bovine brain.

Authors:  H Charbonneau; S Kumar; J P Novack; D K Blumenthal; P R Griffin; J Shabanowitz; D F Hunt; J A Beavo; K A Walsh
Journal:  Biochemistry       Date:  1991-08-13       Impact factor: 3.162

Review 2.  An evaluation of computational strategies for use in the determination of protein structure from distance constraints obtained by nuclear magnetic resonance.

Authors:  T F Havel
Journal:  Prog Biophys Mol Biol       Date:  1991       Impact factor: 3.667

3.  Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA.

Authors:  B F Luisi; W X Xu; Z Otwinowski; L P Freedman; K R Yamamoto; P B Sigler
Journal:  Nature       Date:  1991-08-08       Impact factor: 49.962

4.  An evaluation of the combined use of nuclear magnetic resonance and distance geometry for the determination of protein conformations in solution.

Authors:  T F Havel; K Wüthrich
Journal:  J Mol Biol       Date:  1985-03-20       Impact factor: 5.469

5.  Solvation energy in protein folding and binding.

Authors:  D Eisenberg; A D McLachlan
Journal:  Nature       Date:  1986 Jan 16-22       Impact factor: 49.962

6.  Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers.

Authors:  N P Pavletich; C O Pabo
Journal:  Science       Date:  1993-09-24       Impact factor: 47.728

7.  NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1.

Authors:  J G Omichinski; G M Clore; O Schaad; G Felsenfeld; C Trainor; E Appella; S J Stahl; A M Gronenborn
Journal:  Science       Date:  1993-07-23       Impact factor: 47.728

8.  Three-dimensional structure of calmodulin.

Authors:  Y S Babu; J S Sack; T J Greenhough; C E Bugg; A R Means; W J Cook
Journal:  Nature       Date:  1985 May 2-8       Impact factor: 49.962

Review 9.  Functional implications of interleukin-1 beta based on the three-dimensional structure.

Authors:  B Veerapandian; G L Gilliland; R Raag; A L Svensson; Y Masui; Y Hirai; T L Poulos
Journal:  Proteins       Date:  1992-01

10.  The interaction of calmodulin with amphiphilic peptides.

Authors:  J A Cox; M Comte; J E Fitton; W F DeGrado
Journal:  J Biol Chem       Date:  1985-02-25       Impact factor: 5.157

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  12 in total

1.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

2.  Determining the optimal size of small molecule mixtures for high throughput NMR screening.

Authors:  Kelly A Mercier; Robert Powers
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

3.  Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site.

Authors:  C M Slupsky; L N Gentile; L W Donaldson; C D Mackereth; J J Seidel; B J Graves; L P McIntosh
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

4.  Simulated annealing with restrained molecular dynamics using a flexible restraint potential: theory and evaluation with simulated NMR constraints.

Authors:  D Bassolino-Klimas; R Tejero; S R Krystek; W J Metzler; G T Montelione; R E Bruccoleri
Journal:  Protein Sci       Date:  1996-04       Impact factor: 6.725

5.  Structural homology between the Rap30 DNA-binding domain and linker histone H5: implications for preinitiation complex assembly.

Authors:  C M Groft; S N Uljon; R Wang; M H Werner
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

6.  Interactions between the plasma membrane and the antimicrobial peptide HP (2-20) and its analogues derived from Helicobacter pylori.

Authors:  Kwang H Lee; Dong G Lee; Yoonkyung Park; Dong-Il Kang; Song Y Shin; Kyung-Soo Hahm; Yangmee Kim
Journal:  Biochem J       Date:  2006-02-15       Impact factor: 3.857

7.  Calcium binding decreases the stokes radius of calmodulin and mutants R74A, R90A, and R90G.

Authors:  B R Sorensen; M A Shea
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

Review 8.  The analysis of protein pharmaceuticals: near future advances.

Authors:  C R Middaugh
Journal:  Cytotechnology       Date:  1994       Impact factor: 2.058

9.  Refocusing revisited: an optimized, gradient-enhanced refocused HSQC and its applications in 2D and 3D NMR and in deuterium exchange experiments.

Authors:  J H Davis
Journal:  J Biomol NMR       Date:  1995-06       Impact factor: 2.835

10.  Fluorinated carbohydrates as lectin ligands: dissecting glycan-cyanovirin interactions by using 19F NMR spectroscopy.

Authors:  Elena Matei; Sabine André; Anja Glinschert; Angela Simona Infantino; Stefan Oscarson; Hans-Joachim Gabius; Angela M Gronenborn
Journal:  Chemistry       Date:  2013-02-28       Impact factor: 5.236

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