Literature DB >> 8003970

Conserved sequence pattern in a wide variety of phosphoesterases.

E V Koonin1.   

Abstract

A unique sequence pattern, designated the GD/GNH signature, was shown to be conserved in a wide variety of phosphoesterases. The enzymes containing this signature cleave phosphoester bonds in such different substrates as (1) phosphoserine and phosphothreonine in polypeptides; (2) bis(5'-nucleosidyl)-tetraphosphates; (3) nucleoside 5' phosphates; (4) 2',3'-cyclic nucleotide phosphates; (5) polynucleotides; (6) 2'-5' phosphodiesters in RNA (intron) lariats; (7) sphingomyelin; and (7) various phosphomonoesters. Two conserved acidic amino acid residues and a conserved histidine residue may be directly involved in phosphoester bond cleavage.

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Year:  1994        PMID: 8003970      PMCID: PMC2142799          DOI: 10.1002/pro.5560030218

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  12 in total

1.  Cloning and sequencing of a cDNA encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase from maize. Possible relationship to the alkaline phosphatase family.

Authors:  X Graña; L de Lecea; M R el-Maghrabi; J M Ureña; C Caellas; J Carreras; P Puigdomenech; S J Pilkis; F Climent
Journal:  J Biol Chem       Date:  1992-06-25       Impact factor: 5.157

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Cloning, sequence, and developmental expression of a type 5, tartrate-resistant, acid phosphatase of rat bone.

Authors:  B Ek-Rylander; P Bill; M Norgård; S Nilsson; G Andersson
Journal:  J Biol Chem       Date:  1991-12-25       Impact factor: 5.157

4.  Design and characterization of Escherichia coli mutants devoid of Ap4N-hydrolase activity.

Authors:  F Lévĕque; S Blanchin-Roland; G Fayat; P Plateau; S Blanquet
Journal:  J Mol Biol       Date:  1990-03-20       Impact factor: 5.469

5.  Two early genes of bacteriophage T5 encode proteins containing an NTP-binding sequence motif and probably involved in DNA replication, recombination and repair.

Authors:  V M Blinov; E V Koonin; A E Gorbalenya; A V Kaliman; V M Kryukov
Journal:  FEBS Lett       Date:  1989-07-31       Impact factor: 4.124

6.  Bacterial and bacteriophage protein phosphatases.

Authors:  E V Koonin
Journal:  Mol Microbiol       Date:  1993-05       Impact factor: 3.501

7.  Location of the Bacillus subtilis sbcD gene downstream of addAB, the analogues of E. coli recBC.

Authors:  G J Sharples; R G Lloyd
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

8.  The PROSITE dictionary of sites and patterns in proteins, its current status.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

9.  Isolation, transcription, and inactivation of the gene for an atypical alkaline phosphatase of Synechococcus sp. strain PCC 7942.

Authors:  J M Ray; D Bhaya; M A Block; A R Grossman
Journal:  J Bacteriol       Date:  1991-07       Impact factor: 3.490

10.  Overexpression, site-directed mutagenesis, and mechanism of Escherichia coli acid phosphatase.

Authors:  K Ostanin; E H Harms; P E Stevis; R Kuciel; M M Zhou; R L Van Etten
Journal:  J Biol Chem       Date:  1992-11-15       Impact factor: 5.157

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  30 in total

1.  Comparative genomics and evolution of proteins involved in RNA metabolism.

Authors:  Vivek Anantharaman; Eugene V Koonin; L Aravind
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

2.  Phosphoesterase domains associated with DNA polymerases of diverse origins.

Authors:  L Aravind; E V Koonin
Journal:  Nucleic Acids Res       Date:  1998-08-15       Impact factor: 16.971

3.  Crystal structure of the Entamoeba histolytica RNA lariat debranching enzyme EhDbr1 reveals a catalytic Zn2+ /Mn2+ heterobinucleation.

Authors:  Elizabeth Ransey; Eduardo Paredes; Sourav K Dey; Subha R Das; Annie Heroux; Mark R Macbeth
Journal:  FEBS Lett       Date:  2017-06-14       Impact factor: 4.124

4.  Multiple genes encoding serine/threonine protein phosphatases and their differential expression in Nicotiana tabacum.

Authors:  M C Suh; H S Cho; Y S Kim; J R Liu; H S Lee
Journal:  Plant Mol Biol       Date:  1998-01       Impact factor: 4.076

5.  Biosynthesis of rhizocticins, antifungal phosphonate oligopeptides produced by Bacillus subtilis ATCC6633.

Authors:  Svetlana A Borisova; Benjamin T Circello; Jun Kai Zhang; Wilfred A van der Donk; William W Metcalf
Journal:  Chem Biol       Date:  2010-01-29

Review 6.  Cellular function and molecular structure of ecto-nucleotidases.

Authors:  Herbert Zimmermann; Matthias Zebisch; Norbert Sträter
Journal:  Purinergic Signal       Date:  2012-05-04       Impact factor: 3.765

7.  The phosphatomes of the multicellular myxobacteria Myxococcus xanthus and Sorangium cellulosum in comparison with other prokaryotic genomes.

Authors:  Anke Treuner-Lange
Journal:  PLoS One       Date:  2010-06-17       Impact factor: 3.240

8.  Unexpected sequence similarity between nucleosidases and phosphoribosyltransferases of different specificity.

Authors:  A R Mushegian; E V Koonin
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

9.  The UDP-diacylglucosamine pyrophosphohydrolase LpxH in lipid A biosynthesis utilizes Mn2+ cluster for catalysis.

Authors:  Hayley E Young; Matthew P Donohue; Tatyana I Smirnova; Alex I Smirnov; Pei Zhou
Journal:  J Biol Chem       Date:  2013-07-29       Impact factor: 5.157

Review 10.  The Mre11/Rad50/Nbs1 complex: recent insights into catalytic activities and ATP-driven conformational changes.

Authors:  Tanya T Paull; Rajashree A Deshpande
Journal:  Exp Cell Res       Date:  2014-07-09       Impact factor: 3.905

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