Literature DB >> 8003383

The effects of radiation damage on the structure of frozen hydrated HSV-1 capsids.

J F Conway1, B L Trus, F P Booy, W W Newcomb, J C Brown, A C Steven.   

Abstract

Radiation damage imposes stringent limits on the information content of electron micrographs of biological specimens. In this study, we have investigated its effects on frozen, hydrated specimens and three-dimensional reconstructions calculated from cryomicrographs using capsids of herpes simplex virus as a model system. Multiple-exposure series of micrographs of both B-capsids (which contain no DNA) and C-capsids (which are fully packaged) were recorded and reconstructions were calculated from the first exposures, corresponding to a cumulative electron dose of 6-7 e-/A2, and from later exposures (25-40 e-/A2). Experimental procedures were standardized to ensure that perceived changes in the micrographs and reconstructions would be attributable to radiation damage alone. The effects of the higher doses in both the micrographs and the reconstructions were expressed as a progressive blurring of the finer details, corresponding to a delocalization of structure in the ice-embedded specimens. The resolutions of the reconstructions were quantified according to a form of the Fourier ring correlation coefficient criterion, according to which the first-exposure reconstructions had resolutions of 30-36 A. The fifth-exposure B-capsid reconstruction had comparable nominal resolution, although it exhibited progressively lower correlations at higher spatial frequencies. Qualitatively similar changes in the series of C-capsid reconstructions were observed although they were more pronounced, presumably because these micrographs had lower contrast and signal-to-noise ratios. We infer that the observed changes in the images and reconstructions and the concomitant loss in contrast in the immediate vicinity of the capsid surface may reflect radiation-induced perturbation of molecular structure and/or the release of peptide fragments. Nevertheless, the observed changes are relatively subtle, at least at the operational resolution of this study; overall, our results support earlier indications (M. F. Schmid et al. J. Struct. Biol. 108, 62-68, 1992) that prospects are quite good for tilt-series reconstructions from cryoelectron micrographs, including six to eight views of the same specimen.

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Year:  1993        PMID: 8003383     DOI: 10.1006/jsbi.1993.1052

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  49 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  Molecular tectonic model of virus structural transitions: the putative cell entry states of poliovirus.

Authors:  D M Belnap; D J Filman; B L Trus; N Cheng; F P Booy; J F Conway; S Curry; C N Hiremath; S K Tsang; A C Steven; J M Hogle
Journal:  J Virol       Date:  2000-02       Impact factor: 5.103

3.  Capsid structure of Kaposi's sarcoma-associated herpesvirus, a gammaherpesvirus, compared to those of an alphaherpesvirus, herpes simplex virus type 1, and a betaherpesvirus, cytomegalovirus.

Authors:  B L Trus; J B Heymann; K Nealon; N Cheng; W W Newcomb; J C Brown; D H Kedes; A C Steven
Journal:  J Virol       Date:  2001-03       Impact factor: 5.103

4.  Handedness of the herpes simplex virus capsid and procapsid.

Authors:  Naiqian Cheng; Benes L Trus; David M Belnap; William W Newcomb; Jay C Brown; Alasdair C Steven
Journal:  J Virol       Date:  2002-08       Impact factor: 5.103

5.  Robert Feulgen Lecture. Microscopic assessment of membrane protein structure and function.

Authors:  Andreas Engel
Journal:  Histochem Cell Biol       Date:  2003-07-24       Impact factor: 4.304

6.  Alternating translocation of protein substrates from both ends of ClpXP protease.

Authors:  Joaquin Ortega; Hyun Sook Lee; Michael R Maurizi; Alasdair C Steven
Journal:  EMBO J       Date:  2002-09-16       Impact factor: 11.598

7.  Bubblegrams reveal the inner body of bacteriophage φKZ.

Authors:  Weimin Wu; Julie A Thomas; Naiqian Cheng; Lindsay W Black; Alasdair C Steven
Journal:  Science       Date:  2012-01-13       Impact factor: 47.728

8.  The T=1 capsid protein of Penicillium chrysogenum virus is formed by a repeated helix-rich core indicative of gene duplication.

Authors:  Daniel Luque; José M González; Damiá Garriga; Said A Ghabrial; Wendy M Havens; Benes Trus; Nuria Verdaguer; José L Carrascosa; José R Castón
Journal:  J Virol       Date:  2010-05-12       Impact factor: 5.103

9.  C terminus of infectious bursal disease virus major capsid protein VP2 is involved in definition of the T number for capsid assembly.

Authors:  J R Castón; J L Martínez-Torrecuadrada; A Maraver; E Lombardo; J F Rodríguez; J I Casal; J L Carrascosa
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

10.  Radiation damage effects at four specimen temperatures from 4 to 100 K.

Authors:  Benjamin E Bammes; Joanita Jakana; Michael F Schmid; Wah Chiu
Journal:  J Struct Biol       Date:  2009-11-10       Impact factor: 2.867

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