Literature DB >> 22246767

Bubblegrams reveal the inner body of bacteriophage φKZ.

Weimin Wu1, Julie A Thomas, Naiqian Cheng, Lindsay W Black, Alasdair C Steven.   

Abstract

Dense packing of macromolecules in cellular compartments and higher-order assemblies makes it difficult to pick out even quite large components in electron micrographs, despite nominally high resolution. Immunogold labeling and histochemical procedures offer ways to map certain components but are limited in their applicability. Here, we present a differential mapping procedure, based on the physical principle of protein's greater sensitivity to radiation damage compared with that of nucleic acid.

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Year:  2012        PMID: 22246767      PMCID: PMC3462320          DOI: 10.1126/science.1214120

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  7 in total

1.  Maturation of phage T7 involves structural modification of both shell and inner core components.

Authors:  Xabier Agirrezabala; Jaime Martín-Benito; José R Castón; Roberto Miranda; José María Valpuesta; José L Carrascosa
Journal:  EMBO J       Date:  2005-10-06       Impact factor: 11.598

2.  The genome of bacteriophage phiKZ of Pseudomonas aeruginosa.

Authors:  Vadim V Mesyanzhinov; Johan Robben; Barbara Grymonprez; Victor A Kostyuchenko; Maria V Bourkaltseva; Nina N Sykilinda; Victor N Krylov; Guido Volckaert
Journal:  J Mol Biol       Date:  2002-03-15       Impact factor: 5.469

3.  Cryo-electron energy loss spectroscopy: observations on vitrified hydrated specimens and radiation damage.

Authors:  R D Leapman; S Sun
Journal:  Ultramicroscopy       Date:  1995-07       Impact factor: 2.689

4.  Pseudomonas bacteriophage phi KZ contains an inner body in its capsid.

Authors:  V N Krylov; T A Smirnova; I B Minenkova; T G Plotnikova; I Z Zhazikov; E A Khrenova
Journal:  Can J Microbiol       Date:  1984-06       Impact factor: 2.419

5.  Cryo-EM study of the Pseudomonas bacteriophage phiKZ.

Authors:  Andrei Fokine; Anthony J Battisti; Valorie D Bowman; Andrei V Efimov; Lidia P Kurochkina; Paul R Chipman; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Structure       Date:  2007-09       Impact factor: 5.006

6.  The effects of radiation damage on the structure of frozen hydrated HSV-1 capsids.

Authors:  J F Conway; B L Trus; F P Booy; W W Newcomb; J C Brown; A C Steven
Journal:  J Struct Biol       Date:  1993 Nov-Dec       Impact factor: 2.867

7.  Gp15 and gp16 cooperate in translocating bacteriophage T7 DNA into the infected cell.

Authors:  Chung-Yu Chang; Priscilla Kemp; Ian J Molineux
Journal:  Virology       Date:  2009-12-29       Impact factor: 3.616

  7 in total
  29 in total

Review 1.  Interactions among capsid proteins orchestrate rotavirus particle functions.

Authors:  Shane D Trask; Kristen M Ogden; John T Patton
Journal:  Curr Opin Virol       Date:  2012-05-16       Impact factor: 7.090

2.  Mutational analysis of the Pseudomonas aeruginosa myovirus KZ morphogenetic protease gp175.

Authors:  Julie A Thomas; Lindsay W Black
Journal:  J Virol       Date:  2013-06-05       Impact factor: 5.103

3.  Distribution and Redistribution of HIV-1 Nucleocapsid Protein in Immature, Mature, and Integrase-Inhibited Virions: a Role for Integrase in Maturation.

Authors:  Juan Fontana; Kellie A Jurado; Naiqian Cheng; Ngoc L Ly; James R Fuchs; Robert J Gorelick; Alan N Engelman; Alasdair C Steven
Journal:  J Virol       Date:  2015-07-15       Impact factor: 5.103

4.  Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ.

Authors:  Julie A Thomas; Susan T Weintraub; Weimin Wu; Dennis C Winkler; Naiqian Cheng; Alasdair C Steven; Lindsay W Black
Journal:  Mol Microbiol       Date:  2012-03-20       Impact factor: 3.501

5.  Visualization of uncorrelated, tandem symmetry mismatches in the internal genome packaging apparatus of bacteriophage T7.

Authors:  Fei Guo; Zheng Liu; Frank Vago; Yue Ren; Weimin Wu; Elena T Wright; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-11       Impact factor: 11.205

Review 6.  Molecular architecture of tailed double-stranded DNA phages.

Authors:  Andrei Fokine; Michael G Rossmann
Journal:  Bacteriophage       Date:  2014-02-21

7.  Internal Proteins of the Procapsid and Mature Capsids of Herpes Simplex Virus 1 Mapped by Bubblegram Imaging.

Authors:  Weimin Wu; William W Newcomb; Naiqian Cheng; Anastasia Aksyuk; Dennis C Winkler; Alasdair C Steven
Journal:  J Virol       Date:  2016-04-29       Impact factor: 5.103

8.  Characterization of the genome, proteome, and structure of yersiniophage ϕR1-37.

Authors:  Mikael Skurnik; Heidi J Hyytiäinen; Lotta J Happonen; Saija Kiljunen; Neeta Datta; Laura Mattinen; Kirsty Williamson; Paula Kristo; Magdalena Szeliga; Laura Kalin-Mänttäri; Elina Ahola-Iivarinen; Nisse Kalkkinen; Sarah J Butcher
Journal:  J Virol       Date:  2012-09-12       Impact factor: 5.103

9.  Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.

Authors:  Christian Kukat; Karen M Davies; Christian A Wurm; Henrik Spåhr; Nina A Bonekamp; Inge Kühl; Friederike Joos; Paola Loguercio Polosa; Chan Bae Park; Viktor Posse; Maria Falkenberg; Stefan Jakobs; Werner Kühlbrandt; Nils-Göran Larsson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-24       Impact factor: 11.205

10.  Exploiting radiation damage to map proteins in nucleoprotein complexes: the internal structure of bacteriophage T7.

Authors:  Naiqian Cheng; Weimin Wu; Norman R Watts; Alasdair C Steven
Journal:  J Struct Biol       Date:  2013-12-15       Impact factor: 2.867

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