Literature DB >> 8248804

Visualization of single molecules of RNA polymerase sliding along DNA.

H Kabata1, O Kurosawa, I Arai, M Washizu, S A Margarson, R E Glass, N Shimamoto.   

Abstract

Transcription requires that RNA polymerase binds to promoters buried in nonspecific sites on DNA. The search for promoters may be facilitated if the polymerase slides along the molecule of DNA. Single molecules of Escherichia coli RNA polymerase were visualized, and their movements on immobilized bacteriophage lambda and T7 DNAs were examined. Deviating from drifts by bulk flow, about 40 percent of the enzyme molecules moved along the extended DNA. The results provide direct evidence for sliding as a mechanism for relocation of the enzyme on DNA.

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Year:  1993        PMID: 8248804     DOI: 10.1126/science.8248804

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  97 in total

1.  Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase.

Authors:  M Guthold; X Zhu; C Rivetti; G Yang; N H Thomson; S Kasas; H G Hansma; B Smith; P K Hansma; C Bustamante
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Real-time observation of a single DNA digestion by lambda exonuclease under a fluorescence microscope field.

Authors:  S Matsuura ; J Komatsu; K Hirano; H Yasuda; K Takashima; S Katsura; A Mizuno
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

3.  Observation by fluorescence microscopy of transcription on single combed DNA.

Authors:  Z Gueroui; C Place; E Freyssingeas; B Berge
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

4.  A reaction-diffusion model for interference in meiotic crossing over.

Authors:  Youhei Fujitani; Shintaro Mori; Ichizo Kobayashi
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

Review 5.  How do site-specific DNA-binding proteins find their targets?

Authors:  Stephen E Halford; John F Marko
Journal:  Nucleic Acids Res       Date:  2004-06-03       Impact factor: 16.971

6.  RNA polymerase can track a DNA groove during promoter search.

Authors:  Kumiko Sakata-Sogawa; Nobuo Shimamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-06       Impact factor: 11.205

Review 7.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

8.  Dielectrophoresis of DNA: Quantification by impedance measurements.

Authors:  Anja Henning; Frank F Bier; Ralph Hölzel
Journal:  Biomicrofluidics       Date:  2010-06-29       Impact factor: 2.800

9.  A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

Authors:  Paul C Blainey; Antoine M van Oijen; Anirban Banerjee; Gregory L Verdine; X Sunney Xie
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-03       Impact factor: 11.205

10.  Growth-rate-dependent partitioning of RNA polymerases in bacteria.

Authors:  Stefan Klumpp; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

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