Literature DB >> 7972351

Estimating terrestrial biodiversity through extrapolation.

R K Colwell1, J A Coddington.   

Abstract

Both the magnitude and the urgency of the task of assessing global biodiversity require that we make the most of what we know through the use of estimation and extrapolation. Likewise, future biodiversity inventories need to be designed around the use of effective sampling and estimation procedures, especially for 'hyperdiverse' groups of terrestrial organisms, such as arthropods, nematodes, fungi, and microorganisms. The challenge of estimating patterns of species richness from samples can be separated into (i) the problem of estimating local species richness, and (ii) the problem of estimating the distinctness, or complementarity, of species assemblages. These concepts apply on a wide range of spatial, temporal, and functional scales. Local richness can be estimated by extrapolating species accumulation curves, fitting parametric distributions of relative abundance, or using non-parametric techniques based on the distribution of individuals among species or of species among samples. We present several of these methods and examine their effectiveness for an example data set. We present a simple measure of complementarity, with some biogeographic examples, and outline the difficult problem of estimating complementarity from samples. Finally, we discuss the importance of using 'reference' sites (or sub-sites) to assess the true richness and composition of species assemblages, to measure ecologically significant ratios between unrelated taxa, to measure taxon/sub-taxon (hierarchical) ratios, and to 'calibrate' standardized sampling methods. This information can then be applied to the rapid, approximate assessment of species richness and faunal or floral composition at 'comparative' sites.

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Year:  1994        PMID: 7972351     DOI: 10.1098/rstb.1994.0091

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  314 in total

1.  Riverine barriers and the geographic distribution of Amazonian species.

Authors:  C Gascon; J R Malcolm; J L Patton; M N da Silva; J P Bogart; S C Lougheed; C A Peres; S Neckel; P T Boag
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  Remotely sensed habitat diversity predicts butterfly species richness and community similarity in Canada.

Authors:  J T Kerr; T R Southwood; J Cihlar
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

3.  How many named species are valid?

Authors:  John Alroy
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

Review 4.  Counting the uncountable: statistical approaches to estimating microbial diversity.

Authors:  J B Hughes; J J Hellmann; T H Ricketts; B J Bohannan
Journal:  Appl Environ Microbiol       Date:  2001-10       Impact factor: 4.792

5.  Studying insect diversity in the tropics.

Authors:  H C Godfray; T Lewis; J Memmott
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-11-29       Impact factor: 6.237

6.  The effects of selective logging on the distribution of moths in a Bornean rainforest.

Authors:  S J Willott
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1999-11-29       Impact factor: 6.237

7.  Effects of sampling standardization on estimates of Phanerozoic marine diversification.

Authors:  J Alroy; C R Marshall; R K Bambach; K Bezusko; M Foote; F T Fursich; T A Hansen; S M Holland; L C Ivany; D Jablonski; D K Jacobs; D C Jones; M A Kosnik; S Lidgard; S Low; A I Miller; P M Novack-Gottshall; T D Olszewski; M E Patzkowsky; D M Raup; K Roy; J J Sepkoski; M G Sommers; P J Wagner; A Webber
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-15       Impact factor: 11.205

8.  Empirical and theoretical bacterial diversity in four Arizona soils.

Authors:  John Dunbar; Susan M Barns; Lawrence O Ticknor; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

Review 9.  Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.

Authors:  Cindy E Morris; Marc Bardin; Odile Berge; Pascale Frey-Klett; Nathalie Fromin; Hélène Girardin; Marie-Hélène Guinebretière; Philippe Lebaron; Jean M Thiéry; Marc Troussellier
Journal:  Microbiol Mol Biol Rev       Date:  2002-12       Impact factor: 11.056

10.  Denaturing gradient gel electrophoresis and barcoded pyrosequencing reveal unprecedented archaeal diversity in mangrove sediment and rhizosphere samples.

Authors:  Ana C C Pires; Daniel F R Cleary; Adelaide Almeida; Angela Cunha; Simone Dealtry; Leda C S Mendonça-Hagler; Kornelia Smalla; Newton C M Gomes
Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

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