Literature DB >> 7937050

A comparative database of group I intron structures.

S H Damberger1, R R Gutell.   

Abstract

We have created a database of comparatively derived group I intron secondary structure diagrams. This collection currently contains a broad sampling of phylogenetically and structurally similar and diverse structures from over 200 publicly available intron sequences. As more group I introns are sequenced and added to the database, we anticipate minor refinements in these secondary structure diagrams. These diagrams are directly accessible by computer as well as from the authors.

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Year:  1994        PMID: 7937050      PMCID: PMC308312          DOI: 10.1093/nar/22.17.3508

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

1.  Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis.

Authors:  F Michel; E Westhof
Journal:  J Mol Biol       Date:  1990-12-05       Impact factor: 5.469

2.  Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

Authors:  C R Woese; O Kandler; M L Wheelis
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

3.  Bacterial origin of a chloroplast intron: conserved self-splicing group I introns in cyanobacteria.

Authors:  M Q Xu; S D Kathe; H Goodrich-Blair; S A Nierzwicki-Bauer; D A Shub
Journal:  Science       Date:  1990-12-14       Impact factor: 47.728

4.  An ancient group I intron shared by eubacteria and chloroplasts.

Authors:  M G Kuhsel; R Strickland; J D Palmer
Journal:  Science       Date:  1990-12-14       Impact factor: 47.728

5.  Representation of the secondary and tertiary structure of group I introns.

Authors:  T R Cech; S H Damberger; R R Gutell
Journal:  Nat Struct Biol       Date:  1994-05

Review 6.  Conserved sequences and structures of group I introns: building an active site for RNA catalysis--a review.

Authors:  T R Cech
Journal:  Gene       Date:  1988-12-20       Impact factor: 3.688

7.  Making ends meet: a model for RNA splicing in fungal mitochondria.

Authors:  R W Davies; R B Waring; J A Ray; T A Brown; C Scazzocchio
Journal:  Nature       Date:  1982-12-23       Impact factor: 49.962

8.  DNA sequence analysis of the apocytochrome b gene of Podospora anserina: a new family of intronic open reading frame.

Authors:  D J Cummings; F Michel; K L McNally
Journal:  Curr Genet       Date:  1989-12       Impact factor: 3.886

9.  The intron of the mitochondrial 21S rRNA gene: distribution in different yeast species and sequence comparison between Kluyveromyces thermotolerans and Saccharomyces cerevisiae.

Authors:  A Jacquier; B Dujon
Journal:  Mol Gen Genet       Date:  1983

10.  Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.

Authors:  F Michel; A Jacquier; B Dujon
Journal:  Biochimie       Date:  1982-10       Impact factor: 4.079

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  44 in total

1.  An unspliced group I intron in 23S rRNA links Chlamydiales, chloroplasts, and mitochondria.

Authors:  K D Everett; S Kahane; R M Bush; M G Friedman
Journal:  J Bacteriol       Date:  1999-08       Impact factor: 3.490

2.  Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study.

Authors:  P Brion; R Schroeder; F Michel; E Westhof
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

3.  An important base triple anchors the substrate helix recognition surface within the Tetrahymena ribozyme active site.

Authors:  A A Szewczak; L Ortoleva-Donnelly; M V Zivarts; A K Oyelere; A V Kazantsev; S A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

4.  The tmRNA Website: invasion by an intron.

Authors:  Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  FUGOID: functional genomics of organellar introns database.

Authors:  Fei Li; David L Herrin
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  Novel group I intron in the tRNA(Leu)(UAA) gene of a gamma-proteobacterium isolated from a deep subsurface environment.

Authors:  Alexey A Vepritskiy; Inna A Vitol; Sandra A Nierzwicki-Bauer
Journal:  J Bacteriol       Date:  2002-03       Impact factor: 3.490

7.  Geometric nomenclature and classification of RNA base pairs.

Authors:  N B Leontis; E Westhof
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

8.  Phylogeny and self-splicing ability of the plastid tRNA-Leu group I Intron.

Authors:  Dawn Simon; David Fewer; Thomas Friedl; Debashish Bhattacharya
Journal:  J Mol Evol       Date:  2003-12       Impact factor: 2.395

9.  Crystal structure of a group I intron splicing intermediate.

Authors:  Peter L Adams; Mary R Stahley; Michelle L Gill; Anne B Kosek; Jimin Wang; Scott A Strobel
Journal:  RNA       Date:  2004-12       Impact factor: 4.942

10.  TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.

Authors:  Matthew G Seetin; David H Mathews
Journal:  Bioinformatics       Date:  2012-01-27       Impact factor: 6.937

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