Literature DB >> 11752344

FUGOID: functional genomics of organellar introns database.

Fei Li1, David L Herrin.   

Abstract

FUGOID is a web-based, taxonomically broad organelle intron database that collects and integrates various functional and structural data on organellar (mitochondrial and chloroplast) introns. The main information provided by FUGOID includes intron sequence, subclass, resident ORF, self-splicing capability, host gene, protein factor(s) involved in splicing, mobility, insertion site, twintron, seminal references and taxonomic position of host organism. It is implemented in a relational database management system, allowing sophisticated, user-friendly searching, data entry and revision. Users can access the database by any common web browser using a variety of operating systems. The main page of the database is available at http://wnt.cc.utexas.edu/~ifmr530/introndata/main.htm.

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Year:  2002        PMID: 11752344      PMCID: PMC99166          DOI: 10.1093/nar/30.1.385

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  10 in total

1.  GOBASE: the organelle genome database.

Authors:  N Shimko; L Liu; B F Lang; G Burger
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

Review 2.  Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility.

Authors:  B S Chevalier; B L Stoddard
Journal:  Nucleic Acids Res       Date:  2001-09-15       Impact factor: 16.971

Review 3.  Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing.

Authors:  A M Lambowitz; P S Perlman
Journal:  Trends Biochem Sci       Date:  1990-11       Impact factor: 13.807

Review 4.  Self-splicing of group I introns.

Authors:  T R Cech
Journal:  Annu Rev Biochem       Date:  1990       Impact factor: 23.643

Review 5.  Homing endonucleases: keeping the house in order.

Authors:  M Belfort; R J Roberts
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

Review 6.  Group I introns as mobile genetic elements: facts and mechanistic speculations--a review.

Authors:  B Dujon
Journal:  Gene       Date:  1989-10-15       Impact factor: 3.688

Review 7.  Group I and group II introns.

Authors:  R Saldanha; G Mohr; M Belfort; A M Lambowitz
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

8.  A comparative database of group I intron structures.

Authors:  S H Damberger; R R Gutell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

Review 9.  Group II and group III introns of twintrons: potential relationships with nuclear pre-mRNA introns.

Authors:  D W Copertino; R B Hallick
Journal:  Trends Biochem Sci       Date:  1993-12       Impact factor: 13.807

10.  Database resources of the National Center for Biotechnology Information.

Authors:  D L Wheeler; D M Church; A E Lash; D D Leipe; T L Madden; J U Pontius; G D Schuler; L M Schriml; T A Tatusova; L Wagner; B A Rapp
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

  10 in total
  4 in total

1.  Chloroplast RNA processing and stability.

Authors:  David L Herrin; Jöerg Nickelsen
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

2.  Database for bacterial group II introns.

Authors:  Manuel A Candales; Adrian Duong; Keyar S Hood; Tony Li; Ryan A E Neufeld; Runda Sun; Bonnie A McNeil; Li Wu; Ashley M Jarding; Steven Zimmerly
Journal:  Nucleic Acids Res       Date:  2011-11-10       Impact factor: 16.971

3.  ChloroMitoSSRDB: open source repository of perfect and imperfect repeats in organelle genomes for evolutionary genomics.

Authors:  Gaurav Sablok; Suresh B Mudunuri; Sujan Patnana; Martina Popova; Mario A Fares; Nicola La Porta
Journal:  DNA Res       Date:  2013-01-02       Impact factor: 4.458

4.  ChloroMitoSSRDB 2.00: more genomes, more repeats, unifying SSRs search patterns and on-the-fly repeat detection.

Authors:  Gaurav Sablok; G V Padma Raju; Suresh B Mudunuri; Ratna Prabha; Dhananjaya P Singh; Vesselin Baev; Galina Yahubyan; Peter J Ralph; Nicola La Porta
Journal:  Database (Oxford)       Date:  2015-09-27       Impact factor: 3.451

  4 in total

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