Literature DB >> 7916674

An rps14 pseudogene is transcribed and edited in Arabidopsis mitochondria.

P Brandt1, M Unseld, U Eckert-Ossenkopp, A Brennicke.   

Abstract

Sequence analysis of the region upstream of the apocytochrome b (cob) gene in the Arabidopsis mitochondrial genome identifies an open reading frame with homology to ribosomal protein L5, (rpl5), and a pseudogene with similarity to ribosomal protein S14 (rps14) genes. Both cob and rpl5 genes have intact reading frames, but the rps14 homology is disrupted by a stop codon and a deleted nucleotide. The rpl5 gene, the rps14 pseudogene, and the cob gene are separated by one nucleotide and a 1604-nucleotide-long spacer respectively. A plastid-like tRNA(Ser) is encoded downstream from the cob gene. The entire region is transcribed into a 5-kb transcript, containing the rps14 pseudogene and the cob gene. Cob and rpl5 mRNAs are edited in several positions with different frequencies. The rps14 pseudogene is transcribed and edited in one position in common with other plants. Since no intact rps14 gene is found in the mitochondrial genome of Arabidopsis, the functional gene is presumably encoded in the nucleus.

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Year:  1993        PMID: 7916674     DOI: 10.1007/bf00336785

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  31 in total

1.  Translational frameshifting mediated by a viral sequence in plant cells.

Authors:  V Brault; W A Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

2.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

3.  Nucleotide sequence of the alpha ribosomal protein operon of Escherichia coli.

Authors:  D Bedwell; G Davis; M Gosink; L Post; M Nomura; H Kestler; J M Zengel; L Lindahl
Journal:  Nucleic Acids Res       Date:  1985-06-11       Impact factor: 16.971

4.  Ribosomal protein S14 transcripts are edited in Oenothera mitochondria.

Authors:  W Schuster; M Unseld; B Wissinger; A Brennicke
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

5.  RNA editing in plant mitochondria.

Authors:  R Hiesel; B Wissinger; W Schuster; A Brennicke
Journal:  Science       Date:  1989-12-22       Impact factor: 47.728

6.  The atp6 coding region has been disrupted and a novel reading frame generated in the mitochondrial genome of cytoplasmic male-sterile radish.

Authors:  C A Makaroff; I J Apel; J D Palmer
Journal:  J Biol Chem       Date:  1989-07-15       Impact factor: 5.157

7.  The rice mitochondrial nad3 gene has an extended reading frame at its 5' end: nucleotide sequence analysis of rice trnS, nad3, and rps12 genes.

Authors:  T Suzuki; S Kazama; A Hirai; T Akihama; K Kadowaki
Journal:  Curr Genet       Date:  1991-09       Impact factor: 3.886

8.  RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxI and rps3 mRNAs of Oenothera.

Authors:  W Schuster; A Brennicke
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

9.  Mitochondrial rps14 is a transcribed and edited pseudogene in Arabidopsis thaliana.

Authors:  D Aubert; C Bisanz-Seyer; M Herzog
Journal:  Plant Mol Biol       Date:  1992-12       Impact factor: 4.076

10.  The NCS3 mutation: genetic evidence for the expression of ribosomal protein genes in Zea mays mitochondria.

Authors:  M D Hunt; K J Newton
Journal:  EMBO J       Date:  1991-05       Impact factor: 11.598

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  15 in total

1.  Transfer of rps19 to the nucleus involves the gain of an RNP-binding motif which may functionally replace RPS13 in Arabidopsis mitochondria.

Authors:  H Sánchez; T Fester; S Kloska; W Schröder; W Schuster
Journal:  EMBO J       Date:  1996-05-01       Impact factor: 11.598

2.  The rapeseed mitochondrial gene encoding a homologue of the bacterial protein Ccl1 is divided into two independently transcribed reading frames.

Authors:  H Handa; G Bonnard; J M Grienenberger
Journal:  Mol Gen Genet       Date:  1996-09-13

3.  Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses.

Authors:  Zhiqiang Wu; Daniel B Sloan; Colin W Brown; Mónica Rosenblueth; Jeffrey D Palmer; Han Chuan Ong
Journal:  Mol Biol Evol       Date:  2017-09-01       Impact factor: 16.240

4.  Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella.

Authors:  Ulfar Bergthorsson; Aaron O Richardson; Gregory J Young; Leslie R Goertzen; Jeffrey D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-14       Impact factor: 11.205

5.  RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs.

Authors:  P Giegé; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  Physical and gene organization of mitochondrial DNA from the fertile cytoplasm of sugarbeet (Beta vulgaris L.).

Authors:  T Kubo; Y Satoh; T Muro; T Kinoshita; T Mikami
Journal:  Curr Genet       Date:  1995-08       Impact factor: 3.886

7.  The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria.

Authors:  M Nakazono; Y Ito; N Tsutsumi; A Hirai
Journal:  Curr Genet       Date:  1996-04       Impact factor: 3.886

8.  A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.

Authors:  N Kubo; K Harada; A Hirai; K Kadowaki
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

9.  Arabidopsis PPR40 connects abiotic stress responses to mitochondrial electron transport.

Authors:  Laura Zsigmond; Gábor Rigó; András Szarka; Gyöngyi Székely; Krisztina Otvös; Zsuzsanna Darula; Katalin F Medzihradszky; Csaba Koncz; Zsuzsa Koncz; László Szabados
Journal:  Plant Physiol       Date:  2008-02-27       Impact factor: 8.340

10.  The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana.

Authors:  Hirokazu Handa
Journal:  Nucleic Acids Res       Date:  2003-10-15       Impact factor: 16.971

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