Literature DB >> 8641279

Transfer of rps19 to the nucleus involves the gain of an RNP-binding motif which may functionally replace RPS13 in Arabidopsis mitochondria.

H Sánchez1, T Fester, S Kloska, W Schröder, W Schuster.   

Abstract

The discovery of disrupted rps19 genes in Arabidopsis mitochondria prompted speculation about the transfer to the nuclear compartment. We here describe the functional gene transfer of rps19 into the nucleus of Arabidopsis. Molecular cloning and sequence analysis of rps19 show that the nuclear gene encodes a long N-terminal extension. Import studies of the precursor protein indicate that only a small part of this extension is cleaved off during import. The larger part of the extension, which shows high similarity to conserved RNA-binding domains of the RNP-CS type, became part of the S19 protein. In the Escherichia coli ribosome S19 forms an RNA-binding complex as heterodimer with S13. By using immuno-analysis and import studies we show that a eubacterial-like S13 protein is absent from Arabidopsis mitochondria, and is not substituted by either a chloroplastic or a cytosolic homologue of this ribosomal protein. We therefore propose that either a highly diverged or missing RPS13 has been functionally replaced by an RNP domain that most likely derived from a glycine-rich RNA-binding protein. These results represent the first case of a functional replacement of a ribosomal protein by a common RNA-binding domain and offer a new view on the flexibility of biological systems in using well-adapted functional domains for different jobs.

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Year:  1996        PMID: 8641279      PMCID: PMC450136     

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  58 in total

1.  Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A.

Authors:  K Nagai; C Oubridge; T H Jessen; J Li; P R Evans
Journal:  Nature       Date:  1990-12-06       Impact factor: 49.962

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Journal:  Nucleic Acids Res       Date:  1985-06-25       Impact factor: 16.971

Review 3.  Aminoacyl tRNA synthetases: general scheme of structure-function relationships in the polypeptides and recognition of transfer RNAs.

Authors:  P Schimmel
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

4.  The genes coding for subunit 3 of NADH dehydrogenase and for ribosomal protein S12 are present in the wheat and maize mitochondrial genomes and are co-transcribed.

Authors:  J M Gualberto; H Wintz; J H Weil; J M Grienenberger
Journal:  Mol Gen Genet       Date:  1988-12

Review 5.  Conserved structures and diversity of functions of RNA-binding proteins.

Authors:  C G Burd; G Dreyfuss
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

6.  RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxI and rps3 mRNAs of Oenothera.

Authors:  W Schuster; A Brennicke
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

7.  Primary structure of protein S13 from the small subunit of escherichia coli ribosomes.

Authors:  H Lindemann; B Wittmann-Liebold
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1977-07

8.  Protein substitution in chloroplast ribosome evolution. A eukaryotic cytosolic protein has replaced its organelle homologue (L23) in spinach.

Authors:  M G Bubunenko; J Schmidt; A R Subramanian
Journal:  J Mol Biol       Date:  1994-07-01       Impact factor: 5.469

9.  Expression and functional assembly into bacterial ribosomes of a nuclear-encoded chloroplast ribosomal protein with a long NH2-terminal extension.

Authors:  K Giese; A R Subramanian
Journal:  FEBS Lett       Date:  1991-08-19       Impact factor: 4.124

10.  Derivatives of the yeast mitochondrial ribosomal protein MrpS28 replace ribosomal protein S15 as functional components of the Escherichia coli ribosome.

Authors:  Y Li; M O Huff; P J Hanic-Joyce; S R Ellis
Journal:  J Mol Biol       Date:  1993-10-20       Impact factor: 5.469

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  21 in total

1.  Intracellular gene transfer in action: dual transcription and multiple silencings of nuclear and mitochondrial cox2 genes in legumes.

Authors:  K L Adams; K Song; P G Roessler; J M Nugent; J L Doyle; J J Doyle; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  The S7 ribosomal protein gene is truncated and overlaps a cytochrome c biogenesis gene in pea mitochondria.

Authors:  D Zhuo; H T Nguyen-Lowe; S Subramanian; L Bonen
Journal:  Plant Mol Biol       Date:  1999-05       Impact factor: 4.076

Review 3.  Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates.

Authors:  J D Palmer; K L Adams; Y Cho; C L Parkinson; Y L Qiu; K Song
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

4.  Analysis of the Arabidopsis mitochondrial proteome.

Authors:  A H Millar; L J Sweetlove; P Giegé; C J Leaver
Journal:  Plant Physiol       Date:  2001-12       Impact factor: 8.340

5.  A family of RRM-type RNA-binding proteins specific to plant mitochondria.

Authors:  Matthieu Vermel; Benoit Guermann; Ludovic Delage; Jean-Michel Grienenberger; Laurence Maréchal-Drouard; José M Gualberto
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

6.  Nuclear genes that encode mitochondrial proteins for DNA and RNA metabolism are clustered in the Arabidopsis genome.

Authors:  Annakaisa Elo; Anna Lyznik; Delkin O Gonzalez; Stephen D Kachman; Sally A Mackenzie
Journal:  Plant Cell       Date:  2003-07       Impact factor: 11.277

7.  Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana.

Authors:  Zdravko J Lorković; Andrea Barta
Journal:  Nucleic Acids Res       Date:  2002-02-01       Impact factor: 16.971

8.  Fate of mitochondrially located S19 ribosomal protein genes after transfer of a functional copy to the nucleus in cereals.

Authors:  Magid Fallahi; Jennifer Crosthwait; Sophie Calixte; Linda Bonen
Journal:  Mol Genet Genomics       Date:  2005-02-15       Impact factor: 3.291

9.  Retention of functional genes for S19 ribosomal protein in both the mitochondrion and nucleus for over 60 million years.

Authors:  Sruthi Atluri; Sarah N Rampersad; Linda Bonen
Journal:  Mol Genet Genomics       Date:  2015-07-04       Impact factor: 3.291

10.  Abundance of plastid DNA insertions in nuclear genomes of rice and Arabidopsis.

Authors:  Ilham A Shahmuradov; Yagut Yu Akbarova; Victor V Solovyev; Jalal A Aliyev
Journal:  Plant Mol Biol       Date:  2003-07       Impact factor: 4.076

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