Literature DB >> 7887608

Conservation of the genes for dissimilatory sulfite reductase from Desulfovibrio vulgaris and Archaeoglobus fulgidus allows their detection by PCR.

R R Karkhoff-Schweizer1, D P Huber, G Voordouw.   

Abstract

The structural genes for dissimilatory sulfite reductase (desulfoviridin) from Desulfovibrio vulgaris Hilden-borough were cloned as a 7.2-kbp SacII DNA fragment. Nucleotide sequencing indicated the presence of a third gene, encoding a protein of only 78 amino acids, immediately downstream from the genes for the alpha and beta subunits (dsvA and dsvB). We designated this protein DsvD and the gene encoding it the dsvD gene. The alpha- and beta-subunit sequences are highly homologous to those of the dissimilatory sulfite reductase from Archaeoglobus fulgidus, a thermophilic archaeal sulfate reducer, which grows optimally at 83 degrees C. A gene with significant homology to dsvD was also found immediately downstream from the dsrAB genes of A. fulgidus. The remarkable conservation of gene arrangement and sequence across domain (bacterial versus archaeal) and physical (mesophilic versus thermophilic) boundaries indicates an essential role for DsvD in dissimilatory sulfite reduction and allowed the construction of conserved deoxyoligonucleotide primers for detection of the dissimilatory sulfite reductase genes in the environment.

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Year:  1995        PMID: 7887608      PMCID: PMC167283          DOI: 10.1128/aem.61.1.290-296.1995

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  18 in total

1.  Quantitative reverse sample genome probing of microbial communities and its application to oil field production waters.

Authors:  G Voordouw; Y Shen; C S Harrington; A J Telang; T R Jack; D W Westlake
Journal:  Appl Environ Microbiol       Date:  1993-12       Impact factor: 4.792

2.  Primary structure of the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough): cloning and nucleotide sequence of the reductase gene.

Authors:  J Tan; L R Helms; R P Swenson; J A Cowan
Journal:  Biochemistry       Date:  1991-10-15       Impact factor: 3.162

3.  Reverse sample genome probing, a new technique for identification of bacteria in environmental samples by DNA hybridization, and its application to the identification of sulfate-reducing bacteria in oil field samples.

Authors:  G Voordouw; J K Voordouw; R R Karkhoff-Schweizer; P M Fedorak; D W Westlake
Journal:  Appl Environ Microbiol       Date:  1991-11       Impact factor: 4.792

4.  Dissimilatory sulphite reductase from Archaeoglobus fulgidus: physico-chemical properties of the enzyme and cloning, sequencing and analysis of the reductase genes.

Authors:  C Dahl; N M Kredich; R Deutzmann; H G Trüper
Journal:  J Gen Microbiol       Date:  1993-08

5.  Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.

Authors:  H Towbin; T Staehelin; J Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

6.  Isolation of assimilatroy- and dissimilatory-type sulfite reductases from Desulfovibrio vulgaris.

Authors:  J P Lee; J LeGall; H D Peck
Journal:  J Bacteriol       Date:  1973-08       Impact factor: 3.490

7.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

8.  Graphic methods to determine the function of nucleic acid sequences.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

9.  The third subunit of desulfoviridin-type dissimilatory sulfite reductases.

Authors:  A J Pierik; M G Duyvis; J M van Helvoort; R B Wolbert; W R Hagen
Journal:  Eur J Biochem       Date:  1992-04-01

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  35 in total

1.  Diversity of sulfate-reducing bacteria in oxic and anoxic regions of a microbial mat characterized by comparative analysis of dissimilatory sulfite reductase genes.

Authors:  D Minz; J L Flax; S J Green; G Muyzer; Y Cohen; M Wagner; B E Rittmann; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

2.  Multiple lateral transfers of dissimilatory sulfite reductase genes between major lineages of sulfate-reducing prokaryotes.

Authors:  M Klein; M Friedrich; A J Roger; P Hugenholtz; S Fishbain; H Abicht; L L Blackall; D A Stahl; M Wagner
Journal:  J Bacteriol       Date:  2001-10       Impact factor: 3.490

3.  Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific.

Authors:  Tatsunori Nakagawa; Jun-Ichiro Ishibashi; Akihiko Maruyama; Toshiro Yamanaka; Yusuke Morimoto; Hiroyuki Kimura; Tetsuro Urabe; Manabu Fukui
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

4.  Molecular diversity of sulfate-reducing bacteria from two different continental margin habitats.

Authors:  Xueduan Liu; Christopher E Bagwell; Liyou Wu; Allan H Devol; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

5.  Coupling of functional gene diversity and geochemical data from environmental samples.

Authors:  A V Palumbo; J C Schryver; M W Fields; C E Bagwell; J-Z Zhou; T Yan; X Liu; C C Brandt
Journal:  Appl Environ Microbiol       Date:  2004-11       Impact factor: 4.792

6.  Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited.

Authors:  Vladimir Zverlov; Michael Klein; Sebastian Lücker; Michael W Friedrich; Josef Kellermann; David A Stahl; Alexander Loy; Michael Wagner
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

7.  Dynamics of sulfate-reducing microorganisms (dsrAB genes) in two contrasting mudflats of the Seine estuary (France).

Authors:  J Leloup; F Petit; D Boust; J Deloffre; G Bally; O Clarisse; L Quillet
Journal:  Microb Ecol       Date:  2005-11-14       Impact factor: 4.552

8.  Phylogeography of sulfate-reducing bacteria among disturbed sediments, disclosed by analysis of the dissimilatory sulfite reductase genes (dsrAB).

Authors:  J R Pérez-Jiménez; L J Kerkhof
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

9.  Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications.

Authors:  Jost Liebich; Christopher W Schadt; Song C Chong; Zhili He; Sung-Keun Rhee; Jizhong Zhou
Journal:  Appl Environ Microbiol       Date:  2006-02       Impact factor: 4.792

10.  The genus desulfovibrio: the centennial.

Authors:  G Voordouw
Journal:  Appl Environ Microbiol       Date:  1995-08       Impact factor: 4.792

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