Literature DB >> 7866882

Enhancing PCR amplification and sequencing using DNA-binding proteins.

R Rapley1.   

Abstract

The polymerase chain reaction (PCR) is a powerful core molecular biology technique, which when coupled to chain termination sequencing allows gene and DNA sequence information to be derived rapidly. A number of modifications to the basic PCR format have been developed in an attempt to increase amplification efficiency and the specificity of the reaction. We have applied the use of DNA-binding protein, gene 32 protein from bacteriophage T4 (T4gp32) to increase amplification efficiency with a number of diverse templates. In addition, we have found that using single-stranded DNA-binding protein (SSB) or recA protein in DNA sequencing reactions dramatically increases the resolution of sequencing runs. The use of DNA-binding proteins in amplification and sequencing may prove to be generally applicable in improving the yield and quality of a number of templates from various sources.

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Year:  1994        PMID: 7866882     DOI: 10.1007/BF02745882

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  7 in total

Review 1.  Sequencing of PCR-amplified DNA.

Authors:  I S Bevan; R Rapley; M R Walker
Journal:  PCR Methods Appl       Date:  1992-05

Review 2.  Recent advances in the polymerase chain reaction.

Authors:  H A Erlich; D Gelfand; J J Sninsky
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

3.  Improved yields of long PCR products using gene 32 protein.

Authors:  K Schwarz; T Hansen-Hagge; C Bartram
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

4.  Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia.

Authors:  R K Saiki; S Scharf; F Faloona; K B Mullis; G T Horn; H A Erlich; N Arnheim
Journal:  Science       Date:  1985-12-20       Impact factor: 47.728

5.  An improved method for directly sequencing PCR amplified material using dimethyl sulphoxide.

Authors:  P R Winship
Journal:  Nucleic Acids Res       Date:  1989-02-11       Impact factor: 16.971

6.  Nucleotide sequence analysis of CDR3 elements of a panel of anti-peptide monoclonal antibodies recognizing parathyroid hormone-related protein.

Authors:  R Rapley; P S Flora; D J Walsh; M R Walker
Journal:  Immunology       Date:  1993-03       Impact factor: 7.397

7.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

  7 in total
  16 in total

1.  Quantitative analysis of mRNA amplification by in vitro transcription.

Authors:  L R Baugh; A A Hill; E L Brown; C P Hunter
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

Review 2.  Functional genomics and proteomics: application in neurosciences.

Authors:  K E Wilson; M M Ryan; J E Prime; D P Pashby; P R Orange; G O'Beirne; J G Whateley; S Bahn; C M Morris
Journal:  J Neurol Neurosurg Psychiatry       Date:  2004-04       Impact factor: 10.154

3.  CdTe quantum dots enhance feasibility of EvaGreen-based real-time PCR with decent amplification fidelity.

Authors:  Fuming Sang; Zhizhou Zhang; Zhong Xu; Xiaolei Ju; Hongyuan Wang; Shuanghua Zhang; Changlu Guo
Journal:  Mol Biotechnol       Date:  2013-07       Impact factor: 2.695

4.  A Set of Assays for the Comprehensive Analysis of FMR1 Alleles in the Fragile X-Related Disorders.

Authors:  Bruce E Hayward; Yifan Zhou; Daman Kumari; Karen Usdin
Journal:  J Mol Diagn       Date:  2016-08-12       Impact factor: 5.568

5.  Linear nicking endonuclease-mediated strand-displacement DNA amplification.

Authors:  Aric Joneja; Xiaohua Huang
Journal:  Anal Biochem       Date:  2011-02-20       Impact factor: 3.365

6.  Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning.

Authors:  Henrik Fagman; Elena Amendola; Luca Parrillo; Pietro Zoppoli; Pina Marotta; Marzia Scarfò; Pasquale De Luca; Denise Pires de Carvalho; Michele Ceccarelli; Mario De Felice; Roberto Di Lauro
Journal:  Dev Biol       Date:  2011-09-01       Impact factor: 3.582

7.  RNA amplification for successful gene profiling analysis.

Authors:  Ena Wang
Journal:  J Transl Med       Date:  2005-07-25       Impact factor: 5.531

8.  Multiplex PCR: use of heat-stable Thermus thermophilus RecA protein to minimize non-specific PCR products.

Authors:  Yasushi Shigemori; Tsutomu Mikawa; Takehiko Shibata; Michio Oishi
Journal:  Nucleic Acids Res       Date:  2005-08-08       Impact factor: 16.971

9.  PCR amplification of repetitive DNA: a limitation to genome editing technologies and many other applications.

Authors:  Carl Maximilian Hommelsheim; Lamprinos Frantzeskakis; Mengmeng Huang; Bekir Ülker
Journal:  Sci Rep       Date:  2014-05-23       Impact factor: 4.379

10.  Signal and noise in bridging PCR.

Authors:  Shumo Liu; David S Thaler; Albert Libchaber
Journal:  BMC Biotechnol       Date:  2002-07-18       Impact factor: 2.563

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