Literature DB >> 7823320

The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue.

L H Weaver1, M G Grütter, B W Matthews.   

Abstract

The structure of goose egg-white lysozyme (GEWL) has been refined to an R-value of 15.9% at 1.6 A resolution. Details of the structure determination, the refinement and the structure itself are presented. The structure of a complex of the enzyme with the trisaccharide of N-acetyl glucosamine has also been determined and refined at 1.6 A resolution. The trisaccharide occupies sites analogous to the B, C and D subsites of chicken (HEWL) and phage T4 (T4L) lysozymes. All three lysozymes (GEWL, HEWL and T4L) display the same characteristic set of bridging hydrogen bonds between backbone atoms of the protein and the 2-acetamido group of the saccharide in subsite C. Glu73 of GEWL is seen to correspond closely to Glu35 of HEWL (and to Glu11 of T4L) and supports the established view that this group is critically involved in the catalytic mechanism. There is, however, no obvious residue in goose lysozyme that is a counterpart of Asp52 of chicken lysozyme (or of Asp20 in T4L), suggesting that a second acidic residue is not essential for the catalytic activity of goose lysozyme, and may not be required for the activity of other lysozymes.

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Year:  1995        PMID: 7823320     DOI: 10.1016/s0022-2836(95)80038-7

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  35 in total

Review 1.  Lysozymes in the animal kingdom.

Authors:  Lien Callewaert; Chris W Michiels
Journal:  J Biosci       Date:  2010-03       Impact factor: 1.826

2.  A family of lysozyme-like virulence factors in bacterial pathogens of plants and animals.

Authors:  A R Mushegian; K J Fullner; E V Koonin; E W Nester
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

3.  COG3926 and COG5526: a tale of two new lysozyme-like protein families.

Authors:  Jimin Pei; Nick V Grishin
Journal:  Protein Sci       Date:  2005-09-09       Impact factor: 6.725

4.  Crystal and cryoEM structural studies of a cell wall degrading enzyme in the bacteriophage phi29 tail.

Authors:  Ye Xiang; Marc C Morais; Daniel N Cohen; Valorie D Bowman; Dwight L Anderson; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-07       Impact factor: 11.205

5.  Identification, structure, and function of a novel type VI secretion peptidoglycan glycoside hydrolase effector-immunity pair.

Authors:  John C Whitney; Seemay Chou; Alistair B Russell; Jacob Biboy; Taylor E Gardiner; Michael A Ferrin; Mitchell Brittnacher; Waldemar Vollmer; Joseph D Mougous
Journal:  J Biol Chem       Date:  2013-07-22       Impact factor: 5.157

6.  Structural evidence for lack of inhibition of fish goose-type lysozymes by a bacterial inhibitor of lysozyme.

Authors:  Peter Kyomuhendo; Inge W Nilsen; Bjørn Olav Brandsdal; Arne O Smalås
Journal:  J Mol Model       Date:  2008-05-20       Impact factor: 1.810

7.  Crystallization and preliminary X-ray diffraction studies of the catalytic domain of a novel chitinase, a member of GH family 23, from the moderately thermophilic bacterium Ralstonia sp. A-471.

Authors:  Nobuo Okazaki; Takao Arimori; Masami Nakazawa; Kazutaka Miyatake; Mitsuhiro Ueda; Taro Tamada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-03-26

8.  TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites.

Authors:  A C Wallace; N Borkakoti; J M Thornton
Journal:  Protein Sci       Date:  1997-11       Impact factor: 6.725

9.  Crystal structure of glycosylasparaginase from Flavobacterium meningosepticum.

Authors:  J Xuan; A L Tarentino; B G Grimwood; T H Plummer; T Cui; C Guan; P Van Roey
Journal:  Protein Sci       Date:  1998-03       Impact factor: 6.725

10.  Structural relationships in the lysozyme superfamily: significant evidence for glycoside hydrolase signature motifs.

Authors:  Alexandre Wohlkönig; Joëlle Huet; Yvan Looze; René Wintjens
Journal:  PLoS One       Date:  2010-11-09       Impact factor: 3.240

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