Literature DB >> 21505250

Crystallization and preliminary X-ray diffraction studies of the catalytic domain of a novel chitinase, a member of GH family 23, from the moderately thermophilic bacterium Ralstonia sp. A-471.

Nobuo Okazaki1, Takao Arimori, Masami Nakazawa, Kazutaka Miyatake, Mitsuhiro Ueda, Taro Tamada.   

Abstract

Chitinase from the moderately thermophilic bacterium Ralstonia sp. A-471 (Ra-ChiC) is divided into two domains: a chitin-binding domain (residues 36-80) and a catalytic domain (residues 103-252). Although the catalytic domain of Ra-ChiC has homology to goose-type lysozyme, Ra-ChiC does not show lysozyme activity but does show chitinase activity. The catalytic domain with part of an interdomain loop (Ra-ChiC(89-252)) was crystallized under several different conditions using polyethylene glycol as a precipitant. The crystals diffracted to 1.85 Å resolution and belonged to space group P6(1)22 or P6(5)22, with unit-cell parameters a = b = 100, c = 243 Å. The calculated Matthews coefficient was approximately 3.2, 2.4 or 1.9 Å(3) Da(-1) assuming the presence of three, four or five Ra-ChiC(89-252) molecules in the asymmetric unit, respectively.

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Year:  2011        PMID: 21505250      PMCID: PMC3080159          DOI: 10.1107/S1744309111004751

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

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Review 2.  Chitinases, chitosanases, and lysozymes can be divided into procaryotic and eucaryotic families sharing a conserved core.

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Journal:  Nat Struct Biol       Date:  1996-02

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Authors:  L Holm; C Sander
Journal:  FEBS Lett       Date:  1994-02-28       Impact factor: 4.124

5.  A novel type of family 19 chitinase from Aeromonas sp. No.10S-24. Cloning, sequence, expression, and the enzymatic properties.

Authors:  Mitsuhiro Ueda; Miki Kojima; Tomoye Yoshikawa; Norio Mitsuda; Keiichi Araki; Takashi Kawaguchi; Kazutaka Miyatake; Motoo Arai; Tamo Fukamizo
Journal:  Eur J Biochem       Date:  2003-06

6.  Mutational and computational analysis of the role of conserved residues in the active site of a family 18 chitinase.

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Journal:  Eur J Biochem       Date:  2004-01

7.  The refined structures of goose lysozyme and its complex with a bound trisaccharide show that the "goose-type" lysozymes lack a catalytic aspartate residue.

Authors:  L H Weaver; M G Grütter; B W Matthews
Journal:  J Mol Biol       Date:  1995-01-06       Impact factor: 5.469

8.  Crystal structure of bovine annexin VI in a calcium-bound state.

Authors:  A J Avila-Sakar; C E Creutz; R H Kretsinger
Journal:  Biochim Biophys Acta       Date:  1998-09-08

9.  Refined structure of the chitinase from barley seeds at 2.0 a resolution.

Authors:  H K Song; S W Suh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-03-01

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Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  2 in total

1.  Crystal structures of the catalytic domain of a novel glycohydrolase family 23 chitinase from Ralstonia sp. A-471 reveals a unique arrangement of the catalytic residues for inverting chitin hydrolysis.

Authors:  Takao Arimori; Noriko Kawamoto; Shoko Shinya; Nobuo Okazaki; Masami Nakazawa; Kazutaka Miyatake; Tamo Fukamizo; Mitsuhiro Ueda; Taro Tamada
Journal:  J Biol Chem       Date:  2013-05-08       Impact factor: 5.157

2.  Crystals on the cover 2012.

Authors:  Howard Einspahr; Manfred S Weiss
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24
  2 in total

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