Literature DB >> 7816136

Large rate accelerations in antibody catalysis by strategic use of haptenic charge.

S N Thorn1, R G Daniels, M T Auditor, D Hilvert.   

Abstract

General acid-base catalysis contributes substantially to the efficacy of many enzymes, enabling an impressive array of eliminations, isomerizations, racemizations, hydrolyses and carbon-carbon bond-forming reactions to be carried out with high rates and selectivities. The fundamental challenge of exploiting similar effects in designed catalysts such as catalytic antibodies is that of correctly positioning the catalytic groups in an appropriate active-site microenvironment. Charge complementarity between antibody and hapten (the template used to induce an antibody) has been used successfully in a number of instances to elicit acids and bases within immunoglobulin combining sites, but the activities of the catalysts obtained by this strategy are generally considerably lower than those of natural enzymes. Here we report that by optimizing hapten design and efficiently screening the immune response, antibodies can be obtained that act effectively as general base catalysts. Thus a cationic hapten correctly mimicking the transition-state geometry of all reacting bonds and bearing little resemblance to the reaction product has yielded carboxylate-containing antibodies that catalyse an E2 elimination with more than 10(3) turnovers per active site and rate accelerations of greater than 10(8). These results demonstrate that very large effects can be achieved by strategic use of haptenic charge.

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Year:  1995        PMID: 7816136     DOI: 10.1038/373228a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  32 in total

1.  Optimization of the in-silico-designed kemp eliminase KE70 by computational design and directed evolution.

Authors:  Olga Khersonsky; Daniela Röthlisberger; Andrew M Wollacott; Paul Murphy; Orly Dym; Shira Albeck; Gert Kiss; K N Houk; David Baker; Dan S Tawfik
Journal:  J Mol Biol       Date:  2011-01-28       Impact factor: 5.469

2.  Iterative approach to computational enzyme design.

Authors:  Heidi K Privett; Gert Kiss; Toni M Lee; Rebecca Blomberg; Roberto A Chica; Leonard M Thomas; Donald Hilvert; Kendall N Houk; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-22       Impact factor: 11.205

3.  Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.

Authors:  Olga Khersonsky; Gert Kiss; Daniela Röthlisberger; Orly Dym; Shira Albeck; Kendall N Houk; David Baker; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

4.  Exploring challenges in rational enzyme design by simulating the catalysis in artificial kemp eliminase.

Authors:  Maria P Frushicheva; Jie Cao; Zhen T Chu; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-09       Impact factor: 11.205

5.  Evaluation and ranking of enzyme designs.

Authors:  Gert Kiss; Daniela Röthlisberger; David Baker; K N Houk
Journal:  Protein Sci       Date:  2010-09       Impact factor: 6.725

Review 6.  Optimizing non-natural protein function with directed evolution.

Authors:  Eric M Brustad; Frances H Arnold
Journal:  Curr Opin Chem Biol       Date:  2010-12-23       Impact factor: 8.822

7.  Precision is essential for efficient catalysis in an evolved Kemp eliminase.

Authors:  Rebecca Blomberg; Hajo Kries; Daniel M Pinkas; Peer R E Mittl; Markus G Grütter; Heidi K Privett; Stephen L Mayo; Donald Hilvert
Journal:  Nature       Date:  2013-10-16       Impact factor: 49.962

8.  Kemp Eliminase Activity of Ketosteroid Isomerase.

Authors:  Vandana Lamba; Enis Sanchez; Lauren Rose Fanning; Kathryn Howe; Maria Alejandra Alvarez; Daniel Herschlag; Marcello Forconi
Journal:  Biochemistry       Date:  2017-01-20       Impact factor: 3.162

9.  Kemp Elimination in Cationic Micelles: Designed Enzyme-Like Rates Achieved through the Addition of Long-Chain Bases.

Authors:  Enis Sanchez; Steven Lu; Carson Reed; Joshua Schmidt; Marcello Forconi
Journal:  J Phys Org Chem       Date:  2015-12-01       Impact factor: 2.391

10.  Engineering a model protein cavity to catalyze the Kemp elimination.

Authors:  Matthew Merski; Brian K Shoichet
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-17       Impact factor: 11.205

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