Literature DB >> 27162418

Kemp Elimination in Cationic Micelles: Designed Enzyme-Like Rates Achieved through the Addition of Long-Chain Bases.

Enis Sanchez1, Steven Lu2, Carson Reed1, Joshua Schmidt1, Marcello Forconi1.   

Abstract

The Kemp elimination is prototypical reaction used to study proton abstraction from carbon. Several hydrophobic systems are known to accelerate this reaction, including two classes of computationally-designed enzymes. However, it is unclear whether these computationally-designed enzymes establish specific interactions with their substrates, as natural enzymes do, or if most of the rate acceleration is due to the hydrophobicity of the substrate. We used a simple system composed of cationic micelles and a long chain base (such as lauryl phosphate or lauric acid) to measure the rate acceleration for the Kemp elimination. Remarkably, we found that this simple system can accelerate the reaction by 4 orders of magnitude, approaching the rates of more complex designed systems. Use of different substrates suggests that the reaction takes place at the interface between the micellar head and water (the Stern layer) with the long-chain base embedded in the micelle and the substrate in the aqueous solution. Thus, we suggest that significant rate accelerations can be achieved regardless of the precise positioning of substrates. Because natural enzymes use specific interactions to position their substrates, we propose that acceleration of the Kemp elimination is not a suitable benchmark for the success of the design process, and we suggest that more complex reactions should be used.

Entities:  

Keywords:  Kemp elimination; catalysis; enzyme design; hydrophobic interactions; micelles

Year:  2015        PMID: 27162418      PMCID: PMC4859443          DOI: 10.1002/poc.3515

Source DB:  PubMed          Journal:  J Phys Org Chem        ISSN: 0894-3230            Impact factor:   2.391


  17 in total

1.  Vesicles accelerate proton transfer from carbon up to 850-fold.

Authors:  J Pérez-Juste; F Hollfelder; A J Kirby; J B Engberts
Journal:  Org Lett       Date:  2000-01-27       Impact factor: 6.005

2.  On the magnitude and specificity of medium effects in enzyme-like catalysts for proton transfer.

Authors:  F Hollfelder; A J Kirby; D S Tawfik
Journal:  J Org Chem       Date:  2001-08-24       Impact factor: 4.354

3.  Nonspecific medium effects versus specific group positioning in the antibody and albumin catalysis of the base-promoted ring-opening reactions of benzisoxazoles.

Authors:  Yunfeng Hu; K N Houk; Kazuya Kikuchi; Kinya Hotta; Donald Hilvert
Journal:  J Am Chem Soc       Date:  2004-07-07       Impact factor: 15.419

4.  Iterative approach to computational enzyme design.

Authors:  Heidi K Privett; Gert Kiss; Toni M Lee; Rebecca Blomberg; Roberto A Chica; Leonard M Thomas; Donald Hilvert; Kendall N Houk; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-22       Impact factor: 11.205

5.  Bridging the gaps in design methodologies by evolutionary optimization of the stability and proficiency of designed Kemp eliminase KE59.

Authors:  Olga Khersonsky; Gert Kiss; Daniela Röthlisberger; Orly Dym; Shira Albeck; Kendall N Houk; David Baker; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-08       Impact factor: 11.205

6.  The dependence of micellar rate effects upon reaction mechanism.

Authors:  Clifford A Bunton
Journal:  Adv Colloid Interface Sci       Date:  2006-07-17       Impact factor: 12.984

7.  Kemp elimination catalysts by computational enzyme design.

Authors:  Daniela Röthlisberger; Olga Khersonsky; Andrew M Wollacott; Lin Jiang; Jason DeChancie; Jamie Betker; Jasmine L Gallaher; Eric A Althoff; Alexandre Zanghellini; Orly Dym; Shira Albeck; Kendall N Houk; Dan S Tawfik; David Baker
Journal:  Nature       Date:  2008-03-19       Impact factor: 49.962

8.  Large rate accelerations in antibody catalysis by strategic use of haptenic charge.

Authors:  S N Thorn; R G Daniels; M T Auditor; D Hilvert
Journal:  Nature       Date:  1995-01-19       Impact factor: 49.962

9.  Vesicles and micelles from amphiphilic zinc(II)-cyclen complexes as highly potent promoters of hydrolytic DNA cleavage.

Authors:  Benjamin Gruber; Evgeny Kataev; Jana Aschenbrenner; Stefan Stadlbauer; Burkhard König
Journal:  J Am Chem Soc       Date:  2011-12-02       Impact factor: 15.419

Review 10.  Computer aided enzyme design and catalytic concepts.

Authors:  Maria P Frushicheva; Matthew J L Mills; Patrick Schopf; Manoj K Singh; Ram B Prasad; Arieh Warshel
Journal:  Curr Opin Chem Biol       Date:  2014-05-08       Impact factor: 8.822

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  2 in total

1.  Kemp Eliminase Activity of Ketosteroid Isomerase.

Authors:  Vandana Lamba; Enis Sanchez; Lauren Rose Fanning; Kathryn Howe; Maria Alejandra Alvarez; Daniel Herschlag; Marcello Forconi
Journal:  Biochemistry       Date:  2017-01-20       Impact factor: 3.162

2.  Integrative Role of Albumin: Evolutionary, Biochemical and Pathophysiological Aspects.

Authors:  D A Belinskaia; P A Voronina; N V Goncharov
Journal:  J Evol Biochem Physiol       Date:  2021-12-20       Impact factor: 0.444

  2 in total

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