Literature DB >> 7807533

Chromatin self-organization by mutation bias.

G P Holmquist1.   

Abstract

Proteins, on binding to a DNA sequence, alter the frequency and quality of mutations that occur in the sequence. This represents a reverse flow of information from proteins to DNA. Nucleosome binding causes patterns of UV-induced damage which, when converted to mutations by replication, will phase nucleosomes. We propose that DNA binding proteins create their own high- or low-affinity binding sites along DNA sequences by biased mutational pressure.

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Year:  1994        PMID: 7807533     DOI: 10.1007/bf00173411

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  17 in total

Review 1.  Evolutionary consequences of nonrandom damage and repair of chromatin domains.

Authors:  T Boulikas
Journal:  J Mol Evol       Date:  1992-08       Impact factor: 2.395

2.  Organization of mutations along the genome: a prime determinant of genome evolution.

Authors:  G P Holmquist; J Filipski
Journal:  Trends Ecol Evol       Date:  1994-02       Impact factor: 17.712

3.  Directional mutation pressure and neutral molecular evolution.

Authors:  N Sueoka
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

4.  A population genetic model of selection that maintains specific trinucleotides at a specific location.

Authors:  H Tachida
Journal:  J Mol Evol       Date:  1990-07       Impact factor: 2.395

5.  Sequence periodicities in chicken nucleosome core DNA.

Authors:  S C Satchwell; H R Drew; A A Travers
Journal:  J Mol Biol       Date:  1986-10-20       Impact factor: 5.469

6.  Photofootprint of nucleosome core DNA in intact chromatin having different structural states.

Authors:  J M Gale; M J Smerdon
Journal:  J Mol Biol       Date:  1988-12-20       Impact factor: 5.469

7.  Relationship between G + C in silent sites of codons and amino acid composition of human proteins.

Authors:  D W Collins; T H Jukes
Journal:  J Mol Evol       Date:  1993-03       Impact factor: 2.395

8.  Preferred positions of AA and TT dinucleotides in aligned nucleosomal DNA sequences.

Authors:  I Ioshikhes; A Bolshoy; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  1992-06

9.  Binding of transcription factors creates hot spots for UV photoproducts in vivo.

Authors:  G P Pfeifer; R Drouin; A D Riggs; G P Holmquist
Journal:  Mol Cell Biol       Date:  1992-04       Impact factor: 4.272

10.  Region-specific rates of molecular evolution: a fourfold reduction in the rate of accumulation of "silent" mutations in transcribed versus nontranscribed regions of homologous DNA fragments derived from two closely related mouse species.

Authors:  M S Turker; G E Cooper; P L Bishop
Journal:  J Mol Evol       Date:  1993-01       Impact factor: 2.395

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  5 in total

1.  Clusters of S1 nuclease-hypersensitive sites induced in vivo by DNA damage.

Authors:  J Legault; A Tremblay; D Ramotar; M E Mirault
Journal:  Mol Cell Biol       Date:  1997-09       Impact factor: 4.272

2.  Breakpoints in alpha, beta, and satellite III DNA sequences of chromosome 9 result in a variety of pericentric inversions.

Authors:  K H Ramesh; R S Verma
Journal:  J Med Genet       Date:  1996-05       Impact factor: 6.318

Review 3.  The role of constrained self-organization in genome structural evolution.

Authors:  R von Sternberg
Journal:  Acta Biotheor       Date:  1996-06       Impact factor: 1.774

4.  Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans.

Authors:  Andrew Fire; Rosa Alcazar; Frederick Tan
Journal:  Genetics       Date:  2006-04-28       Impact factor: 4.562

Review 5.  Genome-wide mapping of genomic DNA damage: methods and implications.

Authors:  Stefano Amente; Giovanni Scala; Barbara Majello; Somaiyeh Azmoun; Helen G Tempest; Sanjay Premi; Marcus S Cooke
Journal:  Cell Mol Life Sci       Date:  2021-08-31       Impact factor: 9.261

  5 in total

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