Literature DB >> 3357886

Directional mutation pressure and neutral molecular evolution.

N Sueoka1.   

Abstract

A quantitative theory of directional mutation pressure proposed in 1962 explained the wide variation of DNA base composition observed among different bacteria and its small heterogeneity within individual bacterial species. The theory was based on the assumption that the effect of mutation on a genome is not random but has a directionality toward higher or lower guanine-plus-cytosine content of DNA, and this pressure generates directional changes more in neutral parts of the genome than in functionally significant parts. Now that DNA sequence data are available, the theory allows the estimation of the extent of neutrality of directional mutation pressure against selection. Newly defined parameters were used in the analysis, and two apparently universal constants were discovered. Analysis of DNA sequence has revealed that practically all organisms are subject to directional mutation pressure. The theory also offers plausible explanations for the large heterogeneity in guanine-plus-cytosine content among different parts of the vertebrate genome.

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Year:  1988        PMID: 3357886      PMCID: PMC280056          DOI: 10.1073/pnas.85.8.2653

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  On the genetic basis of variation and heterogeneity of DNA base composition.

Authors:  N SUEOKA
Journal:  Proc Natl Acad Sci U S A       Date:  1962-04-15       Impact factor: 11.205

2.  A correlation between the compositions of deoxyribonucleic and ribonucleic acids.

Authors:  A N BELOZERSKY; A S SPIRIN
Journal:  Nature       Date:  1958-07-12       Impact factor: 49.962

3.  A Factor (or Mutator Gene) Influencing Mutation Rates in Escherichia Coli.

Authors:  H P Treffers; V Spinelli; N O Belser
Journal:  Proc Natl Acad Sci U S A       Date:  1954-11       Impact factor: 11.205

4.  Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes.

Authors:  T H Jukes; V Bhushan
Journal:  J Mol Evol       Date:  1986       Impact factor: 2.395

5.  Nucleotide sequence of a macronuclear DNA molecule coding for alpha-tubulin from the ciliate Stylonychia lemnae. Special codon usage: TAA is not a translation termination codon.

Authors:  E Helftenbein
Journal:  Nucleic Acids Res       Date:  1985-01-25       Impact factor: 16.971

6.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  T Maruyama; T Gojobori; S Aota; T Ikemura
Journal:  Nucleic Acids Res       Date:  1986       Impact factor: 16.971

7.  The unusual mutagenic specificity of an E. Coli mutator gene.

Authors:  C Yanofsky; E C Cox; V Horn
Journal:  Proc Natl Acad Sci U S A       Date:  1966-02       Impact factor: 11.205

8.  Nucleotide sequence of trpE of Salmonella typhimurium and its homology with the corresponding sequence of Escherichia coli.

Authors:  C Yanofsky; M vanCleemput
Journal:  J Mol Biol       Date:  1982-03-05       Impact factor: 5.469

9.  Deviation from the universal code shown by the gene for surface protein 51A in Paramecium.

Authors:  J R Preer; L B Preer; B M Rudman; A J Barnett
Journal:  Nature       Date:  1985 Mar 14-20       Impact factor: 49.962

10.  Cloned murine T200 (Ly-5) cDNA reveals multiple transcripts within B- and T-lymphocyte lineages.

Authors:  W C Raschke
Journal:  Proc Natl Acad Sci U S A       Date:  1987-01       Impact factor: 11.205

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  273 in total

1.  In silico chromosome staining: reconstruction of Giemsa bands from the whole human genome sequence.

Authors:  Yoshihito Niimura; Takashi Gojobori
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-15       Impact factor: 11.205

Review 2.  Horizontal gene transfer and bacterial diversity.

Authors:  Chitra Dutta; Archana Pan
Journal:  J Biosci       Date:  2002-02       Impact factor: 1.826

Review 3.  Origins of gene, genetic code, protein and life: comprehensive view of life systems from a GNC-SNS primitive genetic code hypothesis.

Authors:  K Ikehara
Journal:  J Biosci       Date:  2002-03       Impact factor: 1.826

4.  Natural selection and the frequency distributions of "silent" DNA polymorphism in Drosophila.

Authors:  H Akashi; S W Schaeffer
Journal:  Genetics       Date:  1997-05       Impact factor: 4.562

5.  The compositional adjustment of amino acid substitution matrices.

Authors:  Yi-Kuo Yu; John C Wootton; Stephen F Altschul
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

6.  Evolutionary implications of microbial genome tetranucleotide frequency biases.

Authors:  David T Pride; Richard J Meinersmann; Trudy M Wassenaar; Martin J Blaser
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

7.  Compositional gene landscapes in vertebrates.

Authors:  Stéphane Cruveiller; Kamel Jabbari; Oliver Clay; Giorgio Bernardi
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

8.  Codon usage between genomes is constrained by genome-wide mutational processes.

Authors:  Swaine L Chen; William Lee; Alison K Hottes; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

9.  The biological equilibrium of base pairs.

Authors:  P Strazewski
Journal:  J Mol Evol       Date:  1990-02       Impact factor: 2.395

10.  Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus.

Authors:  Hideto Takami; Yoshihiro Takaki; Gab-Joo Chee; Shinro Nishi; Shigeru Shimamura; Hiroko Suzuki; Satomi Matsui; Ikuo Uchiyama
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

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