Literature DB >> 7795519

Approaches to labeling and identification of active site residues in glycosidases.

S G Withers1, R Aebersold.   

Abstract

Glycosidases play a key role in a number of biological processes and, as such, are of considerable clinical and biotechnological importance. Knowledge of the identifies of catalytically important active site residues is essential for understanding the catalytic mechanism, for enzyme classification, and for targeted bioengineering of glycosidases with altered characteristics. Here we review and discuss traditional strategies and novel approaches based on tandem mass spectrometry for the identification of the key active site residues in glycosidases.

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Year:  1995        PMID: 7795519      PMCID: PMC2143074          DOI: 10.1002/pro.5560040302

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  43 in total

1.  Specfic irreversible inhibition of sweet-almond beta-glucosidase by some beta-glycopyranosylepoxyalkanes and beta-d-glucopyranosyl isothiocyanate.

Authors:  M L Shulman; S D Shiyan; A Y Khorlin
Journal:  Biochim Biophys Acta       Date:  1976-08-12

2.  Alpha-secondary tritium kinetic isotope effects for the hydrolysis of alpha-D-glucopyranosyl fluoride by exo-alpha-glucanases.

Authors:  H Matsui; J S Blanchard; C F Brewer; E J Hehre
Journal:  J Biol Chem       Date:  1989-05-25       Impact factor: 5.157

3.  Identification of aspartic acid 52 as the point of attachment of an affinity label in hen egg white lysozyme.

Authors:  Y Eshdat; J F McKelvy; N Sharon
Journal:  J Biol Chem       Date:  1973-08-25       Impact factor: 5.157

4.  Isolation and amino acid sequence of a hexadecapeptide from the active site of beta-glucosidase A3 from Aspergillus wentii.

Authors:  E Bause; G Legler
Journal:  Hoppe Seylers Z Physiol Chem       Date:  1974-04

5.  Epoxyalkyl oligo-(1 leads to 4)- -D-glucosides as active-site-directed inhibitors of cellulases.

Authors:  G Legler; E Bause
Journal:  Carbohydr Res       Date:  1973-05       Impact factor: 2.104

6.  The identification by x-ray crystallography of the site of attachment of an affinity label to hen egg-white lysozyme.

Authors:  J Moult; Y Eshdat; N Sharon
Journal:  J Mol Biol       Date:  1973-03-25       Impact factor: 5.469

7.  Methionine 500, the site of covalent attachment of an active site-directed reagent of beta-galactosidase.

Authors:  A V Fowler; I Zabin; M L Sinnott; I Zabin
Journal:  J Biol Chem       Date:  1978-08-10       Impact factor: 5.157

8.  Chemical conversion of aspartic acid 52, a catalytic residue in hen egg-white lysozyme, to homoserine.

Authors:  Y Eshdat; A Dunn; N Sharon
Journal:  Proc Natl Acad Sci U S A       Date:  1974-05       Impact factor: 11.205

9.  The active site regions of lacZ and ebg beta-galactosidases are homologous.

Authors:  A V Fowler; P J Smith
Journal:  J Biol Chem       Date:  1983-09-10       Impact factor: 5.157

10.  Role of sugar hydroxyl groups in glycoside hydrolysis. Cleavage mechanism of deoxyglucosides and related substrates by beta-glucosidase A3 from Aspergillus wentii.

Authors:  K R Roeser; G Legler
Journal:  Biochim Biophys Acta       Date:  1981-02-13
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  26 in total

1.  An alpha-L-fucosidase from Thermus sp. with unusually broad specificity.

Authors:  E V Eneyskaya; A A Kulminskaya; N Kalkkinen; N E Nifantiev; N P Arbatskii; A I Saenko; O V Chepurnaya; A V Arutyunyan; K A Shabalin; K N Neustroev
Journal:  Glycoconj J       Date:  2001-10       Impact factor: 2.916

2.  Structural analysis of Thermus thermophilus HB27 mannosyl-3-phosphoglycerate synthase provides evidence for a second catalytic metal ion and new insight into the retaining mechanism of glycosyltransferases.

Authors:  Susana Gonçalves; Nuno Borges; Ana M Esteves; Bruno L Victor; Cláudio M Soares; Helena Santos; Pedro M Matias
Journal:  J Biol Chem       Date:  2010-03-31       Impact factor: 5.157

3.  Larger increases in sensitivity to paracatalytic inactivation than in catalytic competence during experimental evolution of the second beta-galactosidase of Escherichia coli.

Authors:  S V Calugaru; S Krishnan; C J Chany; B G Hall; M L Sinnott
Journal:  Biochem J       Date:  1997-07-01       Impact factor: 3.857

4.  Structural and biochemical characterization of glycoside hydrolase family 79 β-glucuronidase from Acidobacterium capsulatum.

Authors:  Mari Michikawa; Hitomi Ichinose; Mitsuru Momma; Peter Biely; Seino Jongkees; Makoto Yoshida; Toshihisa Kotake; Yoichi Tsumuraya; Stephen G Withers; Zui Fujimoto; Satoshi Kaneko
Journal:  J Biol Chem       Date:  2012-02-24       Impact factor: 5.157

5.  Processing alpha-glucosidase I is an inverting glycosidase.

Authors:  M M Palcic; C H Scaman; A Otter; A Szpacenko; A Romaniouk; Y X Li; I K Vijay
Journal:  Glycoconj J       Date:  1999-07       Impact factor: 2.916

6.  Cloning, mutagenesis, and structural analysis of human pancreatic alpha-amylase expressed in Pichia pastoris.

Authors:  E H Rydberg; G Sidhu; H C Vo; J Hewitt; H C Côte; Y Wang; S Numao; R T MacGillivray; C M Overall; G D Brayer; S G Withers
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

7.  Cellobiose-6-phosphate hydrolase (CelF) of Escherichia coli: characterization and assignment to the unusual family 4 of glycosylhydrolases.

Authors:  J Thompson; S B Ruvinov; D I Freedberg; B G Hall
Journal:  J Bacteriol       Date:  1999-12       Impact factor: 3.490

8.  Distinguishing the differences in β-glycosylceramidase folds, dynamics, and actions informs therapeutic uses.

Authors:  Fredj Ben Bdira; Marta Artola; Herman S Overkleeft; Marcellus Ubbink; Johannes M F G Aerts
Journal:  J Lipid Res       Date:  2018-10-02       Impact factor: 5.922

9.  Irreversible inhibition of the thermophilic esterase EST2 from Alicyclobacillus acidocaldarius.

Authors:  Ferdinando Febbraio; Sandro Esposito D'Andrea; Luigi Mandrich; Luigia Merone; Mosè Rossi; Roberto Nucci; Giuseppe Manco
Journal:  Extremophiles       Date:  2008-07-12       Impact factor: 2.395

10.  Mechanistic insights into the inhibition of endo-β 1,4 xyloglucan hydrolase by a classical aspartic protease inhibitor.

Authors:  Vishnu Menon; Mala Rao
Journal:  J Fluoresc       Date:  2012-12-05       Impact factor: 2.217

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