Literature DB >> 7777556

Accelerated evolution in the protein-coding regions is universal in crotalinae snake venom gland phospholipase A2 isozyme genes.

K Nakashima1, I Nobuhisa, M Deshimaru, M Nakai, T Ogawa, Y Shimohigashi, Y Fukumaki, M Hattori, Y Sakaki, S Hattori.   

Abstract

The nucleotide sequences of four genes encoding Trimeresurus gramineus (green habu snake, crotalinae) venom gland phospholipase A2 (PLA2; phosphatidylcholine 2-acylhydrolase, EC 3.1.1.4) isozymes were compared internally and externally with those of six genes encoding Trimeresurus flavoviridis (habu snake, crotalinae) venom gland PLA2 isozymes. The numbers of nucleotide substitutions per site (KN) for the noncoding regions including introns were one-third to one-eighth of the numbers of nucleotide substitutions per synonymous site (KS) for the protein-coding regions of exons, indicating that the noncoding regions are much more conserved than the protein-coding regions. The KN values for the introns were found to be nearly equivalent to those of introns of T. gramineus and T. flavoviridis TATA box-binding protein genes, which are assumed to be a general (nonvenomous) gene. Thus, it is evident that the introns of venom gland PLA2 isozyme genes have evolved at a similar rate to those of nonvenomous genes. The numbers of nucleotide substitutions per nonsynonymous site (KA) were close to or larger than the KS values for the protein-coding regions in venom gland PLA2 isozyme genes. All of the data combined reveal that Darwinian-type accelerated evolution has universally occurred only in the protein-coding regions of crotalinae snake venom PLA2 isozyme genes.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7777556      PMCID: PMC41745          DOI: 10.1073/pnas.92.12.5605

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Promoter sequences of eukaryotic protein-coding genes.

Authors:  J Corden; B Wasylyk; A Buchwalder; P Sassone-Corsi; C Kedinger; P Chambon
Journal:  Science       Date:  1980-09-19       Impact factor: 47.728

2.  A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.

Authors:  A P Feinberg; B Vogelstein
Journal:  Anal Biochem       Date:  1983-07-01       Impact factor: 3.365

3.  Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application.

Authors:  T Miyata; T Yasunaga
Journal:  J Mol Evol       Date:  1980-09       Impact factor: 2.395

4.  Purification, sequencing and characterization of single amino acid-substituted phospholipase A2 isozymes from Trimeresurus gramineus (green habu snake) venom.

Authors:  T Fukagawa; T Nose; Y Shimohigashi; T Ogawa; N Oda; K Nakashima; C C Chang; M Ohno
Journal:  Toxicon       Date:  1993-08       Impact factor: 3.033

5.  Myotoxicity and physiological effects of three Trimeresurus flavoviridis phospholipases A2.

Authors:  H Kihara; R Uchikawa; S Hattori; M Ohno
Journal:  Biochem Int       Date:  1992-12

6.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

7.  Structures of genes encoding TATA box-binding proteins from Trimeresurus gramineus and T. flavoviridis snakes.

Authors:  K Nakashima; I Nobuhisa; M Deshimaru; T Ogawa; Y Shimohigashi; Y Fukumaki; M Hattori; Y Sakaki; S Hattori; M Ohno
Journal:  Gene       Date:  1995-01-23       Impact factor: 3.688

8.  Sequence determination and characterization of a phospholipase A2 isozyme from Trimeresurus gramineus (green habu snake) venom.

Authors:  T Fukagawa; H Matsumoto; Y Shimohigashi; T Ogawa; N Oda; C C Chang; M Ohno
Journal:  Toxicon       Date:  1992-11       Impact factor: 3.033

9.  Genomic sequences encoding the acidic and basic subunits of Mojave toxin: unusually high sequence identity of non-coding regions.

Authors:  T R John; L A Smith; I I Kaiser
Journal:  Gene       Date:  1994-02-25       Impact factor: 3.688

10.  Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.

Authors:  J M Chirgwin; A E Przybyla; R J MacDonald; W J Rutter
Journal:  Biochemistry       Date:  1979-11-27       Impact factor: 3.162

View more
  38 in total

1.  Serine protease isoforms of Deinagkistrodon acutus venom: cloning, sequencing and phylogenetic analysis.

Authors:  Y M Wang; S R Wang; I H Tsai
Journal:  Biochem J       Date:  2001-02-15       Impact factor: 3.857

2.  Molecular evolution and phylogeny of elapid snake venom three-finger toxins.

Authors:  B G Fry; W Wüster; R M Kini; V Brusic; A Khan; D Venkataraman; A P Rooney
Journal:  J Mol Evol       Date:  2003-07       Impact factor: 2.395

3.  Standardized phylogenetic tree: a reference to discover functional evolution.

Authors:  Toshinori Endo; Soichi Ogishima; Hiroshi Tanaka
Journal:  J Mol Evol       Date:  2003       Impact factor: 2.395

4.  Intraspecific sequence and gene expression variation contribute little to venom diversity in sidewinder rattlesnakes ( Crotalus cerastes).

Authors:  Rhett M Rautsaw; Erich P Hofmann; Mark J Margres; Matthew L Holding; Jason L Strickland; Andrew J Mason; Darin R Rokyta; Christopher L Parkinson
Journal:  Proc Biol Sci       Date:  2019-07-03       Impact factor: 5.349

5.  Regional evolution of venom-gland phospholipase A2 isoenzymes of Trimeresurus flavoviridis snakes in the southwestern islands of Japan.

Authors:  T Chijiwa; M Deshimaru; I Nobuhisa; M Nakai; T Ogawa; N Oda; K Nakashima; Y Fukumaki; Y Shimohigashi; S Hattori; M Ohno
Journal:  Biochem J       Date:  2000-04-15       Impact factor: 3.857

6.  Black mamba venom peptides target acid-sensing ion channels to abolish pain.

Authors:  Sylvie Diochot; Anne Baron; Miguel Salinas; Dominique Douguet; Sabine Scarzello; Anne-Sophie Dabert-Gay; Delphine Debayle; Valérie Friend; Abdelkrim Alloui; Michel Lazdunski; Eric Lingueglia
Journal:  Nature       Date:  2012-10-03       Impact factor: 49.962

7.  Transcriptomic analysis of the venom gland of the red-headed krait (Bungarus flaviceps) using expressed sequence tags.

Authors:  Ang Swee Siang; Robin Doley; Freek J Vonk; R Manjunatha Kini
Journal:  BMC Mol Biol       Date:  2010-03-29       Impact factor: 2.946

8.  Role of accelerated segment switch in exons to alter targeting (ASSET) in the molecular evolution of snake venom proteins.

Authors:  Robin Doley; Stephen P Mackessy; R Manjunatha Kini
Journal:  BMC Evol Biol       Date:  2009-06-30       Impact factor: 3.260

9.  Venomous protease of aphid soldier for colony defense.

Authors:  Mayako Kutsukake; Harunobu Shibao; Naruo Nikoh; Mizue Morioka; Tomohiro Tamura; Tamotsu Hoshino; Satoru Ohgiya; Takema Fukatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-26       Impact factor: 11.205

10.  Interisland mutation of a novel phospholipase A2 from Trimeresurus flavoviridis venom and evolution of Crotalinae group II phospholipases A2.

Authors:  Takahito Chijiwa; Sachiko Hamai; Shoji Tsubouchi; Tomohisa Ogawa; Masanobu Deshimaru; Naoko Oda-Ueda; Shosaku Hattori; Hiroshi Kihara; Susumu Tsunasawa; Motonori Ohno
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.