Literature DB >> 773429

Isotope effects and structure-reactivity correlations in the yeast alcohol dehydrogenase reaction. A study of the enzyme-catalyzed oxidation of aromatic alcohols.

J P Klinman.   

Abstract

Steady-state kinetic parameters for the yeast alcohol dehydrogenase catalyzed oxidation of a series of parasubstituted benzyl alcohols-1, 1-h2 and -1, 1-d2 by NAD+ are reported. Catalytic constants have been found to be characterized by large deuterium isotope effects: kH/kD=4.8, p-Br; 4.2, p-Cl; 3, 4, p-H; 4, 2, p-CH3; 3, 2, p-CH3O. The observed isotope effects on k(cat)/K(A), K(A), and K(B), where K(A) and K(B) are Michaelis constants for NAD+ and alcohol, indicate a borderline rapid equilibrium-steady-state kinetic mechanism involving the random addition of substrate and coenzyme to enzyme. With the exception of p-CH3 and possible p-CH3O substituted benzyl alcohol, k(cat) is concluded to represent a single, rate-limiting hydrogen transfer step. A multiple linear regression analysis of the combined data for benzaldehyde reduction (Klinman, J.P. (1972), J. Biol. Chem. 247, 7977-7987, expanded to include p-CH(CH3) 2-substituted benzaldehyde) and benzyl alcohol oxidation has been carried out to determine the contribution of electronic, hydrophobic, and steric effects to k(cat) and substrate binding. Benzaldehyde binding is concluded to depend on electronic substituent effects as previously reported [log 1/K(ald)=(-0.92 +/- 0.18)sigma+-(0.80 +/- 0.067)], whereas benzyl alcohol binding correlates with substrate hydrophobicity [(log 1/K(alc)=(0.60 +/- 0.14) log P -(1.2 +/- 0.12)]. In the case of benzyl alcohol oxidation, k(cat) is independent of electronic and steric effects; the best of seven equations indicates a small negative dependence of k(cat) on hydrophobicity, which is within experimental error or zero [log k(o)=(-0.075 +/- 0.25) log P -(0.65 +/- 0.19)]. Data for benzaldehyde reduction are correlated at the 99% significance level by a single variable equation [(log k(R)=(2.1 +/- 0.37) sigma+-(0.093 +/- 0.14)] and a two variable equation [(log k(R)=(1.9 +/- 0.33) sigma+ + (0.46 +/- 0.20) log P-(0.46 +/- 0.20)]; these equations indicate (a) a large dependence on electronic substituent as reported previously and (b) a possible role for hydrophobic factors in facilitating catalysis. As the result of the observed hydrophobic substituent effects, different ground-state interactions are suggested for the binding of benzaldehydes and benzyl alcohols. Electronic substituent effects lead to the conclusion that there is little or no change in charge at C-1 of substrate at the transition state, relative to alcohol in the ground state. The significance of these effects to the detailed properties of the hydrogen transfer step is discussed.

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Year:  1976        PMID: 773429     DOI: 10.1021/bi00654a032

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  18 in total

1.  Free-energy landscapes of ion-channel gating are malleable: changes in the number of bound ligands are accompanied by changes in the location of the transition state in acetylcholine-receptor channels.

Authors:  Claudio Grosman
Journal:  Biochemistry       Date:  2003-12-23       Impact factor: 3.162

2.  Elusive transition state of alcohol dehydrogenase unveiled.

Authors:  Daniel Roston; Amnon Kohen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Moving Through Barriers in Science and Life.

Authors:  Judith P Klinman
Journal:  Annu Rev Biochem       Date:  2019-06-20       Impact factor: 23.643

4.  A link between protein structure and enzyme catalyzed hydrogen tunneling.

Authors:  B J Bahnson; T D Colby; J K Chin; B M Goldstein; J P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

Review 5.  Path Sampling Methods for Enzymatic Quantum Particle Transfer Reactions.

Authors:  M W Dzierlenga; M J Varga; S D Schwartz
Journal:  Methods Enzymol       Date:  2016-06-16       Impact factor: 1.600

Review 6.  A reevaluation of the origin of the rate acceleration for enzyme-catalyzed hydride transfer.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Org Biomol Chem       Date:  2017-10-31       Impact factor: 3.876

7.  Catalytic reaction profile for NADH-dependent reduction of aromatic aldehydes by xylose reductase from Candida tenuis.

Authors:  Peter Mayr; Bernd Nidetzky
Journal:  Biochem J       Date:  2002-09-15       Impact factor: 3.857

8.  Stereospecific multiple isotopic labeling of benzyl alcohol.

Authors:  Daniel Roston; Amnon Kohen
Journal:  J Labelled Comp Radiopharm       Date:  2013-12-11       Impact factor: 1.921

9.  Brønsted analysis of aspartate aminotransferase via exogenous catalysis of reactions of an inactive mutant.

Authors:  M D Toney; J F Kirsch
Journal:  Protein Sci       Date:  1992-01       Impact factor: 6.725

10.  Enzymatic Kinetic Isotope Effects from First-Principles Path Sampling Calculations.

Authors:  Matthew J Varga; Steven D Schwartz
Journal:  J Chem Theory Comput       Date:  2016-03-14       Impact factor: 6.006

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