Literature DB >> 7731998

Bacteriophage T7 helicase/primase proteins form rings around single-stranded DNA that suggest a general structure for hexameric helicases.

E H Egelman1, X Yu, R Wild, M M Hingorani, S S Patel.   

Abstract

Most helicases studied to date have been characterized as oligomeric, but the relation between their structure and function has not been understood. The bacteriophage T7 gene 4 helicase/primase proteins act in T7 DNA replication. We have used electron microscopy, three-dimensional reconstruction, and protein crosslinking to demonstrate that both proteins form hexameric rings around single-stranded DNA. Each subunit has two lobes, so the hexamer appears to be two-tiered, with a small ring stacked on a large ring. The single-stranded DNA passes through the central hole of the hexamer, and the data exclude substantial wrapping of the DNA about or within the protein ring. Further, the hexamer binds DNA with a defined polarity as the smaller ring of the hexamer points toward the 5' end of the DNA. The similarity in three-dimensional structure of the T7 gene 4 proteins to that of the Escherichia coli RuvB helicase suggests that polar rings assembled around DNA may be a general feature of numerous hexameric helicases involved in DNA replication, transcription, recombination, and repair.

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Year:  1995        PMID: 7731998      PMCID: PMC42063          DOI: 10.1073/pnas.92.9.3869

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Large scale purification and biochemical characterization of T7 primase/helicase proteins. Evidence for homodimer and heterodimer formation.

Authors:  S S Patel; A H Rosenberg; F W Studier; K A Johnson
Journal:  J Biol Chem       Date:  1992-07-25       Impact factor: 5.157

2.  The simian virus 40 T antigen double hexamer assembles around the DNA at the replication origin.

Authors:  F B Dean; J A Borowiec; T Eki; J Hurwitz
Journal:  J Biol Chem       Date:  1992-07-15       Impact factor: 5.157

3.  A physical model for the translocation and helicase activities of Escherichia coli transcription termination protein Rho.

Authors:  J Geiselmann; Y Wang; S E Seifried; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-15       Impact factor: 11.205

4.  RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro.

Authors:  I R Tsaneva; B Müller; S C West
Journal:  Proc Natl Acad Sci U S A       Date:  1993-02-15       Impact factor: 11.205

5.  Molecular mechanism of transcription-repair coupling.

Authors:  C P Selby; A Sancar
Journal:  Science       Date:  1993-04-02       Impact factor: 47.728

Review 6.  The Rad3 protein from Saccharomyces cerevisiae: a DNA and DNA:RNA helicase with putative RNA helicase activity.

Authors:  P J Deschavanne; I Harosh
Journal:  Mol Microbiol       Date:  1993-03       Impact factor: 3.501

7.  Processing of recombination intermediates by the RecG and RuvAB proteins of Escherichia coli.

Authors:  R G Lloyd; G J Sharples
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

8.  Oligomeric structure of bacteriophage T7 DNA primase/helicase proteins.

Authors:  S S Patel; M M Hingorani
Journal:  J Biol Chem       Date:  1993-05-15       Impact factor: 5.157

9.  DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor.

Authors:  L Schaeffer; R Roy; S Humbert; V Moncollin; W Vermeulen; J H Hoeijmakers; P Chambon; J M Egly
Journal:  Science       Date:  1993-04-02       Impact factor: 47.728

10.  Interactions of bacteriophage T7 DNA primase/helicase protein with single-stranded and double-stranded DNAs.

Authors:  M M Hingorani; S S Patel
Journal:  Biochemistry       Date:  1993-11-23       Impact factor: 3.162

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  85 in total

1.  The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel.

Authors:  M Bárcena; T Ruiz; L E Donate; S E Brown; N E Dixon; M Radermacher; J M Carazo
Journal:  EMBO J       Date:  2001-03-15       Impact factor: 11.598

2.  A ring-opening mechanism for DNA binding in the central channel of the T7 helicase-primase protein.

Authors:  P Ahnert; K M Picha; S S Patel
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

3.  Creating a dynamic picture of the sliding clamp during T4 DNA polymerase holoenzyme assembly by using fluorescence resonance energy transfer.

Authors:  M A Trakselis; S C Alley; E Abel-Santos; S J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

4.  Bacillus subtilis bacteriophage SPP1 hexameric DNA helicase, G40P, interacts with forked DNA.

Authors:  Silvia Ayora; Frank Weise; Pablo Mesa; Andrzej Stasiak; Juan C Alonso
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

5.  The enzymatic basis of processivity in lambda exonuclease.

Authors:  Krithika Subramanian; Wiriya Rutvisuttinunt; Walter Scott; Richard S Myers
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

6.  The Methanobacterium thermoautotrophicum MCM protein can form heptameric rings.

Authors:  Xiong Yu; Margaret S VanLoock; Andrzej Poplawski; Zvi Kelman; Tao Xiang; Bik K Tye; Edward H Egelman
Journal:  EMBO Rep       Date:  2002-07-15       Impact factor: 8.807

7.  DnaB helicase activity is modulated by DNA geometry and force.

Authors:  Noah Ribeck; Daniel L Kaplan; Irina Bruck; Omar A Saleh
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

8.  Dimerization of simian virus 40 T-antigen hexamers activates T-antigen DNA helicase activity.

Authors:  N V Smelkova; J A Borowiec
Journal:  J Virol       Date:  1997-11       Impact factor: 5.103

9.  Architecture of the bacteriophage T4 primosome: electron microscopy studies of helicase (gp41) and primase (gp61).

Authors:  Mona T Norcum; J Anthony Warrington; Michelle M Spiering; Faoud T Ishmael; Michael A Trakselis; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

10.  Promiscuous usage of nucleotides by the DNA helicase of bacteriophage T7: determinants of nucleotide specificity.

Authors:  Ajit K Satapathy; Donald J Crampton; Benjamin B Beauchamp; Charles C Richardson
Journal:  J Biol Chem       Date:  2009-03-17       Impact factor: 5.157

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