Literature DB >> 15738414

Architecture of the bacteriophage T4 primosome: electron microscopy studies of helicase (gp41) and primase (gp61).

Mona T Norcum1, J Anthony Warrington, Michelle M Spiering, Faoud T Ishmael, Michael A Trakselis, Stephen J Benkovic.   

Abstract

Replication of DNA requires helicase and primase activities as part of a primosome assembly. In bacteriophage T4, helicase and primase are separate polypeptides for which little structural information is available and whose mechanism of association within the primosome is not yet understood. Three-dimensional structural information is provided here by means of reconstructions from electron microscopic images. Structures have been calculated for complexes of each of these proteins with ssDNA in the presence of MgATPgammaS. Both the helicase (gp41) and primase (gp61) complexes are asymmetric hexagonal rings. The gp41 structure suggests two distinct forms that have been termed "open" and "closed." The gp61 structure is clearly a six-membered ring, which may be a trimer of dimers or a traditional hexamer of monomers. This structure provides conclusive evidence for an oligomeric primase-to-ssDNA stoichiometry of 6:1.

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Year:  2005        PMID: 15738414      PMCID: PMC553339          DOI: 10.1073/pnas.0500713102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

1.  Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides.

Authors:  M R Singleton; M R Sawaya; T Ellenberger; D B Wigley
Journal:  Cell       Date:  2000-06-09       Impact factor: 41.582

2.  The effect of overabundant projection directions on 3D reconstruction algorithms.

Authors:  C O Sorzano; R Marabini; N Boisset; E Rietzel; R Schröder; G T Herman; J M Carazo
Journal:  J Struct Biol       Date:  2001 Feb-Mar       Impact factor: 2.867

3.  The primase active site is on the outside of the hexameric bacteriophage T7 gene 4 helicase-primase ring.

Authors:  M S VanLoock; Y J Chen; X Yu; S S Patel; E H Egelman
Journal:  J Mol Biol       Date:  2001-08-31       Impact factor: 5.469

4.  A zinc ribbon protein in DNA replication: primer synthesis and macromolecular interactions by the bacteriophage T4 primase.

Authors:  A M Valentine; F T Ishmael; V K Shier; S J Benkovic
Journal:  Biochemistry       Date:  2001-12-18       Impact factor: 3.162

5.  SV40 large T antigen hexamer structure: domain organization and DNA-induced conformational changes.

Authors:  Margaret S VanLoock; Alexander Alexandrov; Xiong Yu; Nicholas R Cozzarelli; Edward H Egelman
Journal:  Curr Biol       Date:  2002-03-19       Impact factor: 10.834

6.  DnaB drives DNA branch migration and dislodges proteins while encircling two DNA strands.

Authors:  Daniel L Kaplan; Mike O'Donnell
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

7.  The crystal structure of the bifunctional primase-helicase of bacteriophage T7.

Authors:  Eric A Toth; Ying Li; Michael R Sawaya; Yifan Cheng; Tom Ellenberger
Journal:  Mol Cell       Date:  2003-11       Impact factor: 17.970

8.  Flexibility of the rings: structural asymmetry in the DnaB hexameric helicase.

Authors:  Shixin Yang; Xiong Yu; Margaret S VanLoock; Maria J Jezewska; Wlodzimierz Bujalowski; Edward H Egelman
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

9.  Structure and assembly of the Escherichia coli transcription termination factor rho and its interaction with RNA. I. Cryoelectron microscopic studies.

Authors:  E P Gogol; S E Seifried; P H von Hippel
Journal:  J Mol Biol       Date:  1991-10-20       Impact factor: 5.469

10.  Oligomeric structure of Escherichia coli primary replicative helicase DnaB protein.

Authors:  W Bujalowski; M M Klonowska; M J Jezewska
Journal:  J Biol Chem       Date:  1994-12-16       Impact factor: 5.157

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  14 in total

1.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

2.  Multiple Escherichia coli RecQ helicase monomers cooperate to unwind long DNA substrates: a fluorescence cross-correlation spectroscopy study.

Authors:  Na Li; Etienne Henry; Elvire Guiot; Pascal Rigolet; Jean-Claude Brochon; Xu-Guang Xi; Eric Deprez
Journal:  J Biol Chem       Date:  2010-01-04       Impact factor: 5.157

3.  Mcm subunits can assemble into two different active unwinding complexes.

Authors:  Diane M Kanter; Irina Bruck; Daniel L Kaplan
Journal:  J Biol Chem       Date:  2008-09-17       Impact factor: 5.157

4.  Investigation of stoichiometry of T4 bacteriophage helicase loader protein (gp59).

Authors:  Sri Ranjini Arumugam; Tae-Hee Lee; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2009-08-20       Impact factor: 5.157

5.  Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4.

Authors:  Davis Jose; Steven E Weitzel; Debra Jing; Peter H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

Review 6.  Understanding DNA replication by the bacteriophage T4 replisome.

Authors:  Stephen J Benkovic; Michelle M Spiering
Journal:  J Biol Chem       Date:  2017-09-25       Impact factor: 5.157

Review 7.  Dynamic coupling between the motors of DNA replication: hexameric helicase, DNA polymerase, and primase.

Authors:  Smita S Patel; Manjula Pandey; Divya Nandakumar
Journal:  Curr Opin Chem Biol       Date:  2011-08-22       Impact factor: 8.822

8.  A single-molecule view of the assembly pathway, subunit stoichiometry, and unwinding activity of the bacteriophage T4 primosome (helicase-primase) complex.

Authors:  Wonbae Lee; Davis Jose; Carey Phelps; Andrew H Marcus; Peter H von Hippel
Journal:  Biochemistry       Date:  2013-04-24       Impact factor: 3.162

Review 9.  Assembly and dynamics of the bacteriophage T4 homologous recombination machinery.

Authors:  Jie Liu; Scott W Morrical
Journal:  Virol J       Date:  2010-12-03       Impact factor: 4.099

Review 10.  Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relatives.

Authors:  Timothy C Mueser; Jennifer M Hinerman; Juliette M Devos; Ryan A Boyer; Kandace J Williams
Journal:  Virol J       Date:  2010-12-03       Impact factor: 4.099

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