Literature DB >> 7719807

Experiments in concept modeling for radiographic image reports.

D S Bell1, E Pattison-Gordon, R A Greenes.   

Abstract

OBJECTIVE: Development of methods for building concept models to support structured data entry and image retrieval in chest radiography.
DESIGN: An organizing model for chest-radiographic reporting was built by analyzing manually a set of natural-language chest-radiograph reports. During model building, clinician-informaticians judged alternative conceptual structures according to four criteria: content of clinically relevant detail, provision for semantic constraints, provision for canonical forms, and simplicity. The organizing model was applied in representing three sample reports in their entirety. To explore the potential for automatic model discovery, the representation of one sample report was compared with the noun phrases derived from the same report by the CLARIT natural-language processing system.
RESULTS: The organizing model for chest-radiographic reporting consists of 62 concept types and 17 relations, arranged in an inheritance network. The broadest types in the model include finding, anatomic locus, procedure, attribute, and status. Diagnoses are modeled as a subtype of finding. Representing three sample reports in their entirety added 79 narrower concept types. Some CLARIT noun phrases suggested valid associations among subtypes of finding, status, and anatomic locus.
CONCLUSIONS: A manual modeling process utilizing explicitly stated criteria for making modeling decisions produced an organizing model that showed consistency in early testing. A combination of top-down and bottom-up modeling was required. Natural-language processing may inform model building, but algorithms that would replace manual modeling were not discovered. Further progress in modeling will require methods for objective model evaluation and tools for formalizing the model-building process.

Mesh:

Year:  1994        PMID: 7719807      PMCID: PMC116203          DOI: 10.1136/jamia.1994.95236156

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  16 in total

1.  Structured reporting of medical findings: evaluation of a system in gastroenterology.

Authors:  K Kuhn; W Gaus; J G Wechsler; P Janowitz; J Tudyka; W Kratzer; W Swobodnik; H Ditschuneit
Journal:  Methods Inf Med       Date:  1992-11       Impact factor: 2.176

2.  PureMD: a Computerized Patient Record software for direct data entry by physicians using a keyboard-free pen-based portable computer.

Authors:  Y A Lussier; M Maksud; B Desruisseaux; P P Yale; R St-Arneault
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1992

3.  Conceptual graphs as an operational model for descriptive findings.

Authors:  J Bernauer
Journal:  Proc Annu Symp Comput Appl Med Care       Date:  1991

4.  Foundations for an electronic medical record.

Authors:  A L Rector; W A Nowlan; S Kay
Journal:  Methods Inf Med       Date:  1991-08       Impact factor: 2.176

5.  An interlingua for electronic interchange of medical information: using frames to map between clinical vocabularies.

Authors:  F E Masarie; R A Miller; O Bouhaddou; N B Giuse; H R Warner
Journal:  Comput Biomed Res       Date:  1991-08

6.  Automatic indexing of abstracts via natural-language processing using a simple thesaurus.

Authors:  D A Evans; W R Hersh; I A Monarch; R G Lefferts; S K Handerson
Journal:  Med Decis Making       Date:  1991 Oct-Dec       Impact factor: 2.583

7.  DXplain. An evolving diagnostic decision-support system.

Authors:  G O Barnett; J J Cimino; J A Hupp; E P Hoffer
Journal:  JAMA       Date:  1987-07-03       Impact factor: 56.272

8.  Recording, retrieval and review of medical data by physician-computer interaction.

Authors:  R A Greenes; G O Barnett; S W Klein; A Robbins; R E Prior
Journal:  N Engl J Med       Date:  1970-02-05       Impact factor: 91.245

9.  ICD, POR, and DRG. Unsolved scientific problems in the nosology of clinical medicine.

Authors:  A R Feinstein
Journal:  Arch Intern Med       Date:  1988-10

10.  Knowledge-based approaches to the maintenance of a large controlled medical terminology.

Authors:  J J Cimino; P D Clayton; G Hripcsak; S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1994 Jan-Feb       Impact factor: 4.497

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  21 in total

1.  Information object definition-based unified modeling language representation of DICOM structured reporting: a case study of transcoding DICOM to XML.

Authors:  Alfredo Tirado-Ramos; Jingkun Hu; K P Lee
Journal:  J Am Med Inform Assoc       Date:  2002 Jan-Feb       Impact factor: 4.497

2.  Bio-Ontology and text: bridging the modeling gap.

Authors:  Carol Friedman; Tara Borlawsky; Lyudmila Shagina; H Rosie Xing; Yves A Lussier
Journal:  Bioinformatics       Date:  2006-07-26       Impact factor: 6.937

Review 3.  Conceptual knowledge acquisition in biomedicine: A methodological review.

Authors:  Philip R O Payne; Eneida A Mendonça; Stephen B Johnson; Justin B Starren
Journal:  J Biomed Inform       Date:  2007-03-27       Impact factor: 6.317

4.  RadiO: a prototype application ontology for radiology reporting tasks.

Authors:  Dirk Marwede; Matthew Fielding; Thomas Kahn
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

5.  Presentation of the 2008 Morris F. Collen Award to Robert A. Greenes.

Authors:  Lucila Ohno-Machado; Donald Ellison; Edward H Shortliffe
Journal:  J Am Med Inform Assoc       Date:  2009 May-Jun       Impact factor: 4.497

6.  Access to data: comparing AccessMed with Query by Review.

Authors:  G Hripcsak; B Allen; J J Cimino; R Lee
Journal:  J Am Med Inform Assoc       Date:  1996 Jul-Aug       Impact factor: 4.497

7.  UMLS-based conceptual queries to biomedical information databases: an overview of the project ARIANE. Unified Medical Language System.

Authors:  M Joubert; M Fieschi; J J Robert; F Volot; D Fieschi
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

8.  The CliniCon framework for context representation in electronic patient records.

Authors:  R Müller
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

9.  Identification of findings suspicious for breast cancer based on natural language processing of mammogram reports.

Authors:  N L Jain; C Friedman
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

Review 10.  Generic data modeling for clinical repositories.

Authors:  S B Johnson
Journal:  J Am Med Inform Assoc       Date:  1996 Sep-Oct       Impact factor: 4.497

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