Literature DB >> 7713410

Temporal allele frequency change and estimation of effective size in populations with overlapping generations.

P E Jorde1, N Ryman.   

Abstract

In this paper we study the process of allele frequency change in finite populations with overlapping generations with the purpose of evaluating the possibility of estimating the effective size from observations of temporal frequency shifts of selectively neutral alleles. Focusing on allele frequency changes between successive cohorts (individuals born in particular years), we show that such changes are not determined by the effective population size alone, as they are when generations are discrete. Rather, in populations with overlapping generations, the amount of temporal allele frequency change is dependent on the age-specific survival and birth rates. Taking this phenomenon into account, we present an estimator for effective size that can be applied to populations with overlapping generations.

Mesh:

Year:  1995        PMID: 7713410      PMCID: PMC1206358     

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  5 in total

1.  Exact inbreeding coefficients in populations with overlapping generations.

Authors:  S C Choy; B S Weir
Journal:  Genetics       Date:  1978-07       Impact factor: 4.562

2.  The dynamics of finite haploid populations with overlapping generations. I. Moments, fixation probabilities and stationary distributions.

Authors:  T H Emigh
Journal:  Genetics       Date:  1979-05       Impact factor: 4.562

3.  Inbreeding in populations with overlapping generations.

Authors:  D L Johnson
Journal:  Genetics       Date:  1977-11       Impact factor: 4.562

4.  Inbreeding and variance effective numbers in populations with overlapping generations.

Authors:  J Felsenstein
Journal:  Genetics       Date:  1971-08       Impact factor: 4.562

5.  Note on genetic drift and estimation of effective population size.

Authors:  F Tajima; M Nei
Journal:  Genetics       Date:  1984-03       Impact factor: 4.562

  5 in total
  53 in total

1.  Empirical Bayes procedure for estimating genetic distance between populations and effective population size.

Authors:  S Kitada; T Hayashi; H Kishino
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  Monte Carlo evaluation of the likelihood for N(e) from temporally spaced samples.

Authors:  E C Anderson; E G Williamson; E A Thompson
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

3.  Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus).

Authors:  Lorenz Hauser; Greg J Adcock; Peter J Smith; Julio H Bernal Ramiréz; Gary R Carvalho
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-16       Impact factor: 11.205

4.  An efficient Monte Carlo method for estimating Ne from temporally spaced samples using a coalescent-based likelihood.

Authors:  Eric C Anderson
Journal:  Genetics       Date:  2005-04-16       Impact factor: 4.562

5.  Panmixia in the European eel: a matter of time...

Authors:  Johan Dannewitz; Gregory E Maes; Leif Johansson; Håkan Wickström; Filip A M Volckaert; Torbjörn Järvi
Journal:  Proc Biol Sci       Date:  2005-06-07       Impact factor: 5.349

Review 6.  Estimation of effective population sizes from data on genetic markers.

Authors:  Jinliang Wang
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-07-29       Impact factor: 6.237

7.  Temporal estimates of effective population size in species with overlapping generations.

Authors:  Robin S Waples; Masashi Yokota
Journal:  Genetics       Date:  2006-11-16       Impact factor: 4.562

8.  Life history and environmental variation interact to determine effective population to census size ratio.

Authors:  Thomas F Turner; Megan J Osborne; Gregory R Moyer; Melissa A Benavides; Dominique Alò
Journal:  Proc Biol Sci       Date:  2006-12-22       Impact factor: 5.349

9.  Unbiased estimator for genetic drift and effective population size.

Authors:  Per Erik Jorde; Nils Ryman
Journal:  Genetics       Date:  2007-08-24       Impact factor: 4.562

10.  On the potential for estimating the effective number of breeders from heterozygote-excess in progeny.

Authors:  A I Pudovkin; D V Zaykin; D Hedgecock
Journal:  Genetics       Date:  1996-09       Impact factor: 4.562

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