Literature DB >> 7656036

T and R states in the crystals of bacterial L-lactate dehydrogenase reveal the mechanism for allosteric control.

S Iwata1, K Kamata, S Yoshida, T Minowa, T Ohta.   

Abstract

The crystal structure of L-lactate dehydrogenase from Bifidobacterium longum, determined to 2.5 A resolution, contains a regular 1:1 complex of T- and R-state tetramers. A comparison of these two structures within the same crystal lattice and kinetical characterization of the T-R transition in solution provide an explanation for the molecular mechanism of allosteric activation. Substrate affinity is controlled by helix sliding between subunits which is triggered by the binding of the activator, fructose 1,6-bisphosphate. The proposed mechanism can explain activation by chemical modification and mutagenesis, as well as suggesting why vertebrate counterparts are not allosteric.

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Year:  1994        PMID: 7656036     DOI: 10.1038/nsb0394-176

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  24 in total

1.  Alteration of χ recognition by RecBCD reveals a regulated molecular latch and suggests a channel-bypass mechanism for biological control.

Authors:  Liang Yang; Naofumi Handa; Bian Liu; Mark S Dillingham; Dale B Wigley; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-17       Impact factor: 11.205

2.  Direct observation in solution of a preexisting structural equilibrium for a mutant of the allosteric aspartate transcarbamoylase.

Authors:  Luc Fetler; Evan R Kantrowitz; Patrice Vachette
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

Review 3.  50 years of allosteric interactions: the twists and turns of the models.

Authors:  Jean-Pierre Changeux
Journal:  Nat Rev Mol Cell Biol       Date:  2013-10-23       Impact factor: 94.444

4.  The core of allosteric motion in Thermus caldophilus L-lactate dehydrogenase.

Authors:  Yoko Ikehara; Kazuhito Arai; Nayuta Furukawa; Tadashi Ohno; Tatsuya Miyake; Shinya Fushinobu; Masahiro Nakajima; Akimasa Miyanaga; Hayao Taguchi
Journal:  J Biol Chem       Date:  2014-09-25       Impact factor: 5.157

5.  Expression, purification, crystallization and preliminary X-ray crystallographic analysis of L-lactate dehydrogenase and its H171C mutant from Bacillus subtilis.

Authors:  Yanfeng Zhang; Xiaoli Gao
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-12-24

6.  Assessing the structural conservation of protein pockets to study functional and allosteric sites: implications for drug discovery.

Authors:  Alejandro Panjkovich; Xavier Daura
Journal:  BMC Struct Biol       Date:  2010-03-31

7.  Moving Beyond Active-Site Detection: MixMD Applied to Allosteric Systems.

Authors:  Phani Ghanakota; Heather A Carlson
Journal:  J Phys Chem B       Date:  2016-06-17       Impact factor: 2.991

8.  Extremely thermostable L(+)-lactate dehydrogenase from Thermotoga maritima: cloning, characterization, and crystallization of the recombinant enzyme in its tetrameric and octameric state.

Authors:  R Ostendorp; G Auerbach; R Jaenicke
Journal:  Protein Sci       Date:  1996-05       Impact factor: 6.725

9.  Interface Residues That Drive Allosteric Transitions Also Control the Assembly of l-Lactate Dehydrogenase.

Authors:  Jie Chen; D Thirumalai
Journal:  J Phys Chem B       Date:  2018-08-27       Impact factor: 2.991

10.  Lys169 of human glucokinase is a determinant for glucose phosphorylation: implication for the atomic mechanism of glucokinase catalysis.

Authors:  Jian Zhang; Chenjing Li; Ting Shi; Kaixian Chen; Xu Shen; Hualiang Jiang
Journal:  PLoS One       Date:  2009-07-20       Impact factor: 3.240

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