Literature DB >> 7647557

Sequential backbone assignment of isotopically enriched proteins in D2O by deuterium-decoupled HA(CA)N and HA(CACO)N.

A C Wang1, S Grzesiek, R Tschudin, P J Lodi, A Bax.   

Abstract

It is demonstrated that sequential resonance assignment of the backbone 1H alpha and 15N resonances of proteins can be obtained without recourse to the backbone amide protons, an approach which should be useful for assignment of regions with rapidly exchanging backbone amide protons and for proteins rich in proline residues. The method relies on the combined use of two 2D experiments, HA(CA)N and HA(CACO)N or their 3D analogs, which correlate 1H alpha with the intraresidue 15N and with the 15N resonance of the next residue. The experiments are preferably conducted in D2O, where very high resolution in the 15N dimension can be achieved by using 2H decoupling. The approach is demonstrated for a sample of human ubiquitin, uniformly enriched in 13C and 15N. Complete backbone and 13C beta/1H beta resonance assignments are presented.

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Year:  1995        PMID: 7647557     DOI: 10.1007/bf00182281

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  7 in total

1.  Improved resolution in three-dimensional constant-time triple resonance NMR spectroscopy of proteins.

Authors:  A G Palmer; W J Fairbrother; J Cavanagh; P E Wright; M Rance
Journal:  J Biomol NMR       Date:  1992-01       Impact factor: 2.835

2.  Sequential 1H NMR assignments and secondary structure identification of human ubiquitin.

Authors:  P L Weber; S C Brown; L Mueller
Journal:  Biochemistry       Date:  1987-11-17       Impact factor: 3.162

3.  Two-dimensional 1H NMR study of human ubiquitin: a main chain directed assignment and structure analysis.

Authors:  D L Di Stefano; A J Wand
Journal:  Biochemistry       Date:  1987-11-17       Impact factor: 3.162

4.  An efficient triple-resonance experiment for proton-directed sequential backbone assignment of medium-sized proteins.

Authors:  A C Wang; P J Lodi; J Qin; G W Vuister; A M Gronenborn; G M Clore
Journal:  J Magn Reson B       Date:  1994-10

5.  Measurement of 15N-13C J couplings in staphylococcal nuclease.

Authors:  F Delaglio; D A Torchia; A Bax
Journal:  J Biomol NMR       Date:  1991-11       Impact factor: 2.835

6.  Fast internal main-chain dynamics of human ubiquitin.

Authors:  D M Schneider; M J Dellwo; A J Wand
Journal:  Biochemistry       Date:  1992-04-14       Impact factor: 3.162

7.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

  7 in total
  45 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

2.  Angular dependence of 1J(Ni,Calphai) and 2J(Ni,Calpha(i-1)) coupling constants measured in J-modulated HSQCs.

Authors:  Julia Wirmer; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2002-05       Impact factor: 2.835

3.  RefDB: a database of uniformly referenced protein chemical shifts.

Authors:  Haiyan Zhang; Stephen Neal; David S Wishart
Journal:  J Biomol NMR       Date:  2003-03       Impact factor: 2.835

4.  Preparation, characterization, and NMR spectroscopy of encapsulated proteins dissolved in low viscosity fluids.

Authors:  Charles R Babu; Peter F Flynn; A Joshua Wand
Journal:  J Biomol NMR       Date:  2003-04       Impact factor: 2.835

5.  Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints.

Authors:  Alexander W Giesen; Steve W Homans; Jonathan Miles Brown
Journal:  J Biomol NMR       Date:  2003-01       Impact factor: 2.835

6.  Mars -- robust automatic backbone assignment of proteins.

Authors:  Young-Sang Jung; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

7.  Determination of backbone nitrogen-nitrogen J correlations in proteins.

Authors:  K Theis; A J Dingley; A Hoffmann; J G Omichinski; S Grzesiek
Journal:  J Biomol NMR       Date:  1997-12       Impact factor: 2.835

8.  HA-detected experiments for the backbone assignment of intrinsically disordered proteins.

Authors:  Sampo Mäntylahti; Olli Aitio; Maarit Hellman; Perttu Permi
Journal:  J Biomol NMR       Date:  2010-05-01       Impact factor: 2.835

9.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

10.  FAM105A/OTULINL Is a Pseudodeubiquitinase of the OTU-Class that Localizes to the ER Membrane.

Authors:  Derek F Ceccarelli; Sofiia Ivantsiv; Amber Anne Mullin; Etienne Coyaud; Noah Manczyk; Pierre Maisonneuve; Igor Kurinov; Liang Zhao; Chris Go; Anne-Claude Gingras; Brian Raught; Sabine Cordes; Frank Sicheri
Journal:  Structure       Date:  2019-05-02       Impact factor: 5.006

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