Literature DB >> 7647231

Electrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction center.

P Beroza1, D R Fredkin, M Y Okamura, G Feher.   

Abstract

The titration of amino acids and the energetics of electron transfer from the primary electron acceptor (QA) to the secondary electron acceptor (QB) in the photosynthetic reaction center of Rhodobacter sphaeroides are calculated using a continuum electrostatic model. Strong electrostatic interactions between titrating sites give rise to complex titration curves. Glu L212 is calculated to have an anomalously broad titration curve, which explains the seemingly contradictory experimental results concerning its pKa. The electrostatic field following electron transfer shifts the average protonation of amino acids near the quinones. The pH dependence of the free energy between Q-AQB and QAQ-B calculated from these shifts is in good agreement with experiment. However, the calculated absolute free energy difference is in severe disagreement (by approximately 230 meV) with the observed experimental value, i.e., electron transfer from Q-A to QB is calculated to be unfavorable. The large stabilization energy of the Q-A state arises from the predominantly positively charged residues in the vicinity of QA in contrast to the predominantly negatively charged residues near QB. The discrepancy between calculated and experimental values for delta G(Q-AQB-->QAQ-B) points to limitations of the continuum electrostatic model. Inclusion of other contributions to the energetics (e.g., protein motion following quinone reduction) that may improve the agreement between theory and experiment are discussed.

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Year:  1995        PMID: 7647231      PMCID: PMC1282134          DOI: 10.1016/S0006-3495(95)80406-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

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Authors:  C Tanford; R Roxby
Journal:  Biochemistry       Date:  1972-05-23       Impact factor: 3.162

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Authors:  J P Allen; G Feher; T O Yeates; H Komiya; D C Rees
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

7.  Protonation of Glu L212 following QB- formation in the photosynthetic reaction center of Rhodobacter sphaeroides: evidence from time-resolved infrared spectroscopy.

Authors:  R Hienerwadel; S Grzybek; C Fogel; W Kreutz; M Y Okamura; M L Paddock; J Breton; E Nabedryk; W Mäntele
Journal:  Biochemistry       Date:  1995-03-07       Impact factor: 3.162

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Journal:  Q Rev Biophys       Date:  1984-08       Impact factor: 5.318

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Authors:  J Warwicker; H C Watson
Journal:  J Mol Biol       Date:  1982-06-05       Impact factor: 5.469

10.  Electron transfer in reaction centers of Rhodopseudomonas sphaeroides. I. Determination of the charge recombination pathway of D+QAQ(-)B and free energy and kinetic relations between Q(-)AQB and QAQ(-)B.

Authors:  D Kleinfeld; M Y Okamura; G Feher
Journal:  Biochim Biophys Acta       Date:  1984-07-27
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  30 in total

1.  Key role of proline L209 in connecting the distant quinone pockets in the reaction center of Rhodobacter sphaeroides.

Authors:  J Tandori; P Maroti; E Alexov; P Sebban; L Baciou
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

2.  The position of QB in the photosynthetic reaction center depends on pH: a theoretical analysis of the proton uptake upon QB reduction.

Authors:  Antoine Taly; Pierre Sebban; Jeremy C Smith; G Matthias Ullmann
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

3.  Unblocked statistical-coil tetrapeptides and pentapeptides in aqueous solution: a theoretical study.

Authors:  Jorge A Vila; Daniel R Ripoll; Héctor A Baldoni; Harold A Scheraga
Journal:  J Biomol NMR       Date:  2002-11       Impact factor: 2.835

4.  Future directions in protein function prediction.

Authors:  Ihsan A Shehadi; Huyuan Yang; Mary Jo Ondrechen
Journal:  Mol Biol Rep       Date:  2002-12       Impact factor: 2.316

5.  Multiconformation continuum electrostatics analysis of the NhaA Na+/H+ antiporter of Escherichia coli with functional implications.

Authors:  Elena Olkhova; Carola Hunte; Emanuela Screpanti; Etana Padan; Hartmut Michel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-13       Impact factor: 11.205

6.  Transmembrane segment II of NhaA Na+/H+ antiporter lines the cation passage, and Asp65 is critical for pH activation of the antiporter.

Authors:  Katia Herz; Abraham Rimon; Elena Olkhova; Lena Kozachkov; Etana Padan
Journal:  J Biol Chem       Date:  2009-11-18       Impact factor: 5.157

7.  Conformational gating of the electron transfer reaction QA-.QB --> QAQB-. in bacterial reaction centers of Rhodobacter sphaeroides determined by a driving force assay.

Authors:  M S Graige; G Feher; M Y Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

Review 8.  The role of electrostatic interactions for cytochrome c oxidase function.

Authors:  A Kannt; C R Lancaster; H Michel
Journal:  J Bioenerg Biomembr       Date:  1998-02       Impact factor: 2.945

Review 9.  Molecular dynamics simulations in photosynthesis.

Authors:  Nicoletta Liguori; Roberta Croce; Siewert J Marrink; Sebastian Thallmair
Journal:  Photosynth Res       Date:  2020-04-15       Impact factor: 3.573

10.  THEMATICS: a simple computational predictor of enzyme function from structure.

Authors:  M J Ondrechen; J G Clifton; D Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-16       Impact factor: 11.205

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