Literature DB >> 7638183

Ultrafast thermally induced unfolding of RNase A.

C M Phillips1, Y Mizutani, R M Hochstrasser.   

Abstract

A temperature jump (T-jump) method capable of initiating thermally induced processes on the picosecond time scale in aqueous solutions is introduced. Protein solutions are heated by energy from a laser pulse that is absorbed by homogeneously dispersed molecules of the dye crystal violet. These act as transducers by releasing the energy as heat to cause a T-jump of up to 10 K with a time resolution of 70 ps. The method was applied to the unfolding of RNase A. At pH 5.7 and 59 degrees C, a T-jump of 3-6 K induced unfolding which was detected by picosecond transient infrared spectroscopy of the amide I region between 1600 and 1700 cm-1. The difference spectral profile at 3.5 ns closely resembled that found for the equilibrium (native-unfolded) states. The signal at 1633 cm-1, corresponding to the beta-sheet structure, achieved 15 +/- 2% of the decrease found at equilibrium, within 5.5 ns. However, no decrease in absorbance was detected until 1 ns after the T-ump. The disruption of beta-sheet therefore appears to be subject to a delay of approximately 1 ns. Prior to 1 ns after the T-jump, water might be accessing the intact hydrophobic regions.

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Year:  1995        PMID: 7638183      PMCID: PMC41325          DOI: 10.1073/pnas.92.16.7292

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

Review 1.  Protein folding studied using hydrogen-exchange labeling and two-dimensional NMR.

Authors:  S W Englander; L Mayne
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992

2.  Temperature-jump NMR study of protein folding: ribonuclease A at low pH.

Authors:  K Akasaka; A Naito; H Nakatani
Journal:  J Biomol NMR       Date:  1991-05       Impact factor: 2.835

3.  NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A.

Authors:  J B Udgaonkar; R L Baldwin
Journal:  Nature       Date:  1988-10-20       Impact factor: 49.962

4.  Characterization of the unfolding of ribonuclease A in aqueous methanol solvents.

Authors:  A L Fink; B Painter
Journal:  Biochemistry       Date:  1987-03-24       Impact factor: 3.162

Review 5.  From independent modules to molten globules: observations on the nature of protein folding intermediates.

Authors:  J Skolnick; A Kolinski; A Godzik
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-15       Impact factor: 11.205

6.  Molecular dynamics analysis of a ribonuclease C-peptide analogue.

Authors:  K V Soman; A Karimi; D A Case
Journal:  Biopolymers       Date:  1993-10       Impact factor: 2.505

7.  Guanidinium chloride induction of partial unfolding in amide proton exchange in RNase A.

Authors:  S L Mayo; R L Baldwin
Journal:  Science       Date:  1993-11-05       Impact factor: 47.728

8.  Thermally denatured ribonuclease A retains secondary structure as shown by FTIR.

Authors:  S Seshadri; K A Oberg; A L Fink
Journal:  Biochemistry       Date:  1994-02-15       Impact factor: 3.162

9.  Perchlorate-induced denaturation of ribonuclease A: investigation of possible folding intermediates.

Authors:  J M Scholtz; R L Baldwin
Journal:  Biochemistry       Date:  1993-05-04       Impact factor: 3.162

10.  Fast events in protein folding initiated by nanosecond laser photolysis.

Authors:  C M Jones; E R Henry; Y Hu; C K Chan; S D Luck; A Bhuyan; H Roder; J Hofrichter; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1993-12-15       Impact factor: 11.205

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  51 in total

1.  Nanosecond temperature jump and time-resolved Raman study of thermal unfolding of ribonuclease A.

Authors:  K Yamamoto; Y Mizutani; T Kitagawa
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

2.  Protein folding and unfolding on a complex energy landscape.

Authors:  D T Leeson; F Gai; H M Rodriguez; L M Gregoret; R B Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

3.  Temperature jump-induced secondary structural change of the membrane protein bacteriorhodopsin in the premelting temperature region: a nanosecond time-resolved Fourier transform infrared study.

Authors:  J Wang; M A El-Sayed
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

4.  Picosecond conformational transition and equilibration of a cyclic peptide.

Authors:  Jens Bredenbeck; Jan Helbing; Arne Sieg; Tobias Schrader; Wolfgang Zinth; Christian Renner; Raymond Behrendt; Luis Moroder; Josef Wachtveitl; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-07       Impact factor: 11.205

5.  Nanosecond temperature jump relaxation dynamics of cyclic beta-hairpin peptides.

Authors:  Shelia J Maness; Stefan Franzen; Alan C Gibbs; Timothy P Causgrove; R Brian Dyer
Journal:  Biophys J       Date:  2003-06       Impact factor: 4.033

Review 6.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

7.  Laser-assisted single-molecule refolding (LASR).

Authors:  Rui Zhao; Myles Marshall; Elvin A Alemán; Rajan Lamichhane; Andrew Feig; David Rueda
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

8.  Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

Authors:  Hoi Sung Chung; Munira Khalil; Adam W Smith; Ziad Ganim; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-03       Impact factor: 11.205

9.  Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein.

Authors:  Hairong Ma; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

10.  Quantifying kinetic paths of protein folding.

Authors:  Jin Wang; Kun Zhang; Hongyang Lu; Erkang Wang
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

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