Literature DB >> 12736378

Picosecond conformational transition and equilibration of a cyclic peptide.

Jens Bredenbeck1, Jan Helbing, Arne Sieg, Tobias Schrader, Wolfgang Zinth, Christian Renner, Raymond Behrendt, Luis Moroder, Josef Wachtveitl, Peter Hamm.   

Abstract

Ultrafast IR spectroscopy is used to monitor the nonequilibrium backbone dynamics of a cyclic peptide in the amide I vibrational range with picosecond time resolution. A conformational change is induced by means of a photoswitch integrated into the peptide backbone. Although the main conformational change of the backbone is completed after only 20 ps, the subsequent equilibration in the new region of conformational space continues for times >16 ns. Relaxation and equilibration processes of the peptide backbone occur on a discrete hierarchy of time scales. Albeit possessing only a few conformational degrees of freedom compared with a protein, the peptide behaves highly nontrivially and provides insights into the complexity of fast protein folding.

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Year:  2003        PMID: 12736378      PMCID: PMC164467          DOI: 10.1073/pnas.1036583100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  The speed limit for protein folding measured by triplet-triplet energy transfer.

Authors:  O Bieri; J Wirz; B Hellrung; M Schutkowski; M Drewello; T Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

2.  Interpreting the folding kinetics of helical proteins.

Authors:  Y Zhou; M Karplus
Journal:  Nature       Date:  1999-09-23       Impact factor: 49.962

3.  Hierarchies and logarithmic oscillations in the temporal relaxation patterns of proteins and other complex systems.

Authors:  R Metzler; J Klafter; J Jortner
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

Review 4.  Fast kinetics and mechanisms in protein folding.

Authors:  W A Eaton; V Muñoz; S J Hagen; G S Jas; L J Lapidus; E R Henry; J Hofrichter
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

5.  Photomodulation of conformational states. II. Mono- and bicyclic peptides with (4-aminomethyl)phenylazobenzoic acid as backbone constituent.

Authors:  C Renner; J Cramer; R Behrendt; L Moroder
Journal:  Biopolymers       Date:  2000-12       Impact factor: 2.505

6.  Noise suppression in femtosecond mid-infrared light sources.

Authors:  P Hamm; R A Kaindl; J Stenger
Journal:  Opt Lett       Date:  2000-12-15       Impact factor: 3.776

7.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

8.  Observation of distinct nanosecond and microsecond protein folding events.

Authors:  R M Ballew; J Sabelko; M Gruebele
Journal:  Nat Struct Biol       Date:  1996-11

9.  Fast events in protein folding: relaxation dynamics of secondary and tertiary structure in native apomyoglobin.

Authors:  R Gilmanshin; S Williams; R H Callender; W H Woodruff; R B Dyer
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

Review 10.  Protein folding dynamics: the diffusion-collision model and experimental data.

Authors:  M Karplus; D L Weaver
Journal:  Protein Sci       Date:  1994-04       Impact factor: 6.725

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  22 in total

1.  Design, synthesis, and photochemical validation of peptide linchpins containing the S,S-tetrazine phototrigger.

Authors:  Mohannad Abdo; Stephen P Brown; Joel R Courter; Matthew J Tucker; Robin M Hochstrasser; Amos B Smith
Journal:  Org Lett       Date:  2012-06-26       Impact factor: 6.005

2.  A Biophysical Perspective on Enzyme Catalysis.

Authors:  Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-12-18       Impact factor: 3.162

3.  Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.

Authors:  Hoi Sung Chung; Munira Khalil; Adam W Smith; Ziad Ganim; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-03       Impact factor: 11.205

4.  Alpha-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy.

Authors:  Jens Bredenbeck; Jan Helbing; Janet R Kumita; G Andrew Woolley; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-07       Impact factor: 11.205

Review 5.  Coherent femtosecond multidimensional probes of molecular vibrations.

Authors:  Shaul Mukamel; Wei Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-19       Impact factor: 11.205

6.  Photoinduced conformational dynamics of a photoswitchable peptide: a nonequilibrium molecular dynamics simulation study.

Authors:  Phuong H Nguyen; Roman D Gorbunov; Gerhard Stock
Journal:  Biophys J       Date:  2006-05-26       Impact factor: 4.033

7.  Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.

Authors:  Janne A Ihalainen; Jens Bredenbeck; Rolf Pfister; Jan Helbing; Lei Chi; Ivo H M van Stokkum; G Andrew Woolley; Peter Hamm
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

8.  Light-triggered beta-hairpin folding and unfolding.

Authors:  Tobias E Schrader; Wolfgang J Schreier; Thorben Cordes; Florian O Koller; Galina Babitzki; Robert Denschlag; Christian Renner; Markus Löweneck; Shou-Liang Dong; Luis Moroder; Paul Tavan; Wolfgang Zinth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-24       Impact factor: 11.205

9.  Two-dimensional spectroscopy at infrared and optical frequencies.

Authors:  Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

10.  Loop formation in unfolded polypeptide chains on the picoseconds to microseconds time scale.

Authors:  Beat Fierz; Helmut Satzger; Christopher Root; Peter Gilch; Wolfgang Zinth; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

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