Literature DB >> 7624336

Submillisecond folding of monomeric lambda repressor.

G S Huang1, T G Oas.   

Abstract

The folding kinetics of a truncated form of the N-terminal domain of phage lambda repressor [lambda 6-85] has been investigated by using the technique of dynamic NMR. lambda 6-85 has been shown previously to fold in a purely two-state fashion. This allows the determination of folding and unfolding rates from simulation of the exchange-broadened aromatic resonances of Tyr-22. The folding kinetics were determined over a range of 1.35 to 3.14 M urea. The urea dependence of both folding and unfolding rate constants is exponential, suggesting that the rate-determining step is invariant at the urea concentrations studied. The folding and unfolding rates extrapolated to 0 M urea at 37 degrees C are 3600 +/- 400 s-1 and 27 +/- 6 s-1, respectively. The observed lambda 6-85 folding rate constant exceeds that of other fast-folding globular proteins by a factor of 14-54. The urea dependence of the folding and unfolding rate constants suggests that the transition state of the rate-determining step is considerably more exposed to solvent than previously studied protein-folding transition states. The surprising rapidity of lambda 6-85 folding and unfolding may be the consequence of its all-helical secondary structure. These kinetic results clearly demonstrate that all of the fundamental events of protein folding can occur on the submillisecond time scale.

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Year:  1995        PMID: 7624336      PMCID: PMC41433          DOI: 10.1073/pnas.92.15.6878

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Refined 1.8 A crystal structure of the lambda repressor-operator complex.

Authors:  L J Beamer; C O Pabo
Journal:  J Mol Biol       Date:  1992-09-05       Impact factor: 5.469

2.  Kinetic analysis of folding and unfolding the 56 amino acid IgG-binding domain of streptococcal protein G.

Authors:  P Alexander; J Orban; P Bryan
Journal:  Biochemistry       Date:  1992-08-18       Impact factor: 3.162

3.  The folding of hen lysozyme involves partially structured intermediates and multiple pathways.

Authors:  S E Radford; C M Dobson; P A Evans
Journal:  Nature       Date:  1992-07-23       Impact factor: 49.962

4.  Detection and characterization of an early folding intermediate of T4 lysozyme using pulsed hydrogen exchange and two-dimensional NMR.

Authors:  J Lu; F W Dahlquist
Journal:  Biochemistry       Date:  1992-05-26       Impact factor: 3.162

5.  Extrapolation to water of kinetic and equilibrium data for the unfolding of barnase in urea solutions.

Authors:  A Matouschek; J M Matthews; C M Johnson; A R Fersht
Journal:  Protein Eng       Date:  1994-09

6.  Structure of the transition state for the folding/unfolding of the barley chymotrypsin inhibitor 2 and its implications for mechanisms of protein folding.

Authors:  D E Otzen; L S Itzhaki; N F elMasry; S E Jackson; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  1994-10-25       Impact factor: 11.205

7.  P22 Arc repressor: folding kinetics of a single-domain, dimeric protein.

Authors:  M E Milla; R T Sauer
Journal:  Biochemistry       Date:  1994-02-08       Impact factor: 3.162

8.  Specific nucleus as the transition state for protein folding: evidence from the lattice model.

Authors:  V I Abkevich; A M Gutin; E I Shakhnovich
Journal:  Biochemistry       Date:  1994-08-23       Impact factor: 3.162

9.  Structure and stability of monomeric lambda repressor: NMR evidence for two-state folding.

Authors:  G S Huang; T G Oas
Journal:  Biochemistry       Date:  1995-03-28       Impact factor: 3.162

10.  Folding and stability of a tryptophan-containing mutant of ubiquitin.

Authors:  S Khorasanizadeh; I D Peters; T R Butt; H Roder
Journal:  Biochemistry       Date:  1993-07-13       Impact factor: 3.162

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  58 in total

1.  Folding propensities of synthetic peptide fragments covering the entire sequence of phage 434 Cro protein.

Authors:  S Padmanabhan; M A Jiménez; M Rico
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  The alpha-helix folds on the millisecond time scale.

Authors:  D T Clarke; A J Doig; B J Stapley; G R Jones
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

3.  Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation.

Authors:  U Mayor; C M Johnson; V Daggett; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

4.  A quantitative, high-throughput screen for protein stability.

Authors:  S Ghaemmaghami; M C Fitzgerald; T G Oas
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

5.  Using flexible loop mimetics to extend phi-value analysis to secondary structure interactions.

Authors:  N Ferguson; J R Pires; F Toepert; C M Johnson; Y P Pan; R Volkmer-Engert; J Schneider-Mergener; V Daggett; H Oschkinat; A Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

Review 6.  NMRKIN: simulating line shapes from two-dimensional spectra of proteins upon ligand binding.

Authors:  Ulrich L Günther; Brian Schaffhausen
Journal:  J Biomol NMR       Date:  2002-03       Impact factor: 2.835

7.  Protein topology determines binding mechanism.

Authors:  Yaakov Levy; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-23       Impact factor: 11.205

8.  What causes hyperfluorescence: folding intermediates or conformationally flexible native states?

Authors:  John Ervin; Edgar Larios; Szabolcs Osváth; Klaus Schulten; Martin Gruebele
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

9.  Meeting halfway on the bridge between protein folding theory and experiment.

Authors:  Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-25       Impact factor: 11.205

10.  Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein.

Authors:  Yongjin Zhu; Darwin O V Alonso; Kosuke Maki; Cheng-Yen Huang; Steven J Lahr; Valerie Daggett; Heinrich Roder; William F DeGrado; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-11       Impact factor: 11.205

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