Literature DB >> 12657736

Meeting halfway on the bridge between protein folding theory and experiment.

Vijay S Pande1.   

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Year:  2003        PMID: 12657736      PMCID: PMC152957          DOI: 10.1073/pnas.0830965100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  35 in total

1.  The birth of computational structural biology.

Authors:  M Levitt
Journal:  Nat Struct Biol       Date:  2001-05

2.  Mechanisms and kinetics of beta-hairpin formation.

Authors:  D K Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-14       Impact factor: 11.205

3.  How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta.

Authors:  C Clementi; P A Jennings; J N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-23       Impact factor: 11.205

4.  Prediction of protein structure.

Authors:  D Shortle
Journal:  Curr Biol       Date:  2000-01-27       Impact factor: 10.834

Review 5.  Is protein folding hierarchic? I. Local structure and peptide folding.

Authors:  R L Baldwin; G D Rose
Journal:  Trends Biochem Sci       Date:  1999-01       Impact factor: 13.807

6.  Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation.

Authors:  U Mayor; C M Johnson; V Daggett; A R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

7.  Persistence of native-like topology in a denatured protein in 8 M urea.

Authors:  D Shortle; M S Ackerman
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

8.  Designing a 20-residue protein.

Authors:  Jonathan W Neidigh; R Matthew Fesinmeyer; Niels H Andersen
Journal:  Nat Struct Biol       Date:  2002-06

9.  Beta-hairpin folding simulations in atomistic detail using an implicit solvent model.

Authors:  B Zagrovic; E J Sorin; V Pande
Journal:  J Mol Biol       Date:  2001-10-12       Impact factor: 5.469

10.  Ab initio prediction of protein structure using LINUS.

Authors:  Rajgopal Srinivasan; George D Rose
Journal:  Proteins       Date:  2002-06-01
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  5 in total

1.  The effects of nonnative interactions on protein folding rates: theory and simulation.

Authors:  Cecilia Clementi; Steven S Plotkin
Journal:  Protein Sci       Date:  2004-07       Impact factor: 6.725

2.  The experimental folding landscape of monomeric lactose repressor, a large two-domain protein, involves two kinetic intermediates.

Authors:  Corey J Wilson; Payel Das; Cecilia Clementi; Kathleen S Matthews; Pernilla Wittung-Stafshede
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-03       Impact factor: 11.205

3.  Universality and diversity of folding mechanics for three-helix bundle proteins.

Authors:  Jae Shick Yang; Stefan Wallin; Eugene I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-14       Impact factor: 11.205

4.  Folding Proteins at 500 ns/hour with Work Queue.

Authors:  Badi' Abdul-Wahid; Li Yu; Dinesh Rajan; Haoyun Feng; Eric Darve; Douglas Thain; Jesús A Izaguirre
Journal:  Proc IEEE Int Conf Escience       Date:  2012-10

5.  A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories.

Authors:  Hui Yang; Srinivasan Parthasarathy; Duygu Ucar
Journal:  Algorithms Mol Biol       Date:  2007-04-04       Impact factor: 1.405

  5 in total

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