Literature DB >> 7614551

Strategy for deletion of complete open reading frames in Saccharomyces cerevisiae.

I Eberhardt1, S Hohmann.   

Abstract

The classical disruption method for yeast genes is by using in vitro deletion of the gene of interest, or of a part of it, with restriction enzymes. We are now routinely using a strategy that takes advantage of polymerase chain reactions (PCRs) which amplify large pieces of DNA. Since this approach results in a complete, precise deletion of the open reading frame, which is replaced by a unique restriction site, the ligated PCR can be used for the insertion of different markers or for two-step gene disruptions without an inserted marker. As we have now used this strategy for the deletion of more than ten genes we have in this report included some hints based on our experience.

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Year:  1995        PMID: 7614551     DOI: 10.1007/BF00352097

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  12 in total

1.  New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites.

Authors:  R D Gietz; A Sugino
Journal:  Gene       Date:  1988-12-30       Impact factor: 3.688

2.  Long PCR.

Authors:  S Cheng; S Y Chang; P Gravitt; R Respess
Journal:  Nature       Date:  1994-06-23       Impact factor: 49.962

3.  A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae.

Authors:  A Baudin; O Ozier-Kalogeropoulos; A Denouel; F Lacroute; C Cullin
Journal:  Nucleic Acids Res       Date:  1993-07-11       Impact factor: 16.971

4.  An optimized freeze-squeeze method for the recovery of DNA fragments from agarose gels.

Authors:  D Tautz; M Renz
Journal:  Anal Biochem       Date:  1983-07-01       Impact factor: 3.365

5.  One-step gene disruption in yeast.

Authors:  R J Rothstein
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

6.  GPD1, which encodes glycerol-3-phosphate dehydrogenase, is essential for growth under osmotic stress in Saccharomyces cerevisiae, and its expression is regulated by the high-osmolarity glycerol response pathway.

Authors:  J Albertyn; S Hohmann; J M Thevelein; B A Prior
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

7.  The growth and signalling defects of the ggs1 (fdp1/byp1) deletion mutant on glucose are suppressed by a deletion of the gene encoding hexokinase PII.

Authors:  S Hohmann; M J Neves; W de Koning; R Alijo; J Ramos; J M Thevelein
Journal:  Curr Genet       Date:  1993       Impact factor: 3.886

8.  PDC6, a weakly expressed pyruvate decarboxylase gene from yeast, is activated when fused spontaneously under the control of the PDC1 promoter.

Authors:  S Hohmann
Journal:  Curr Genet       Date:  1991-11       Impact factor: 3.886

9.  The YDp plasmids: a uniform set of vectors bearing versatile gene disruption cassettes for Saccharomyces cerevisiae.

Authors:  G Berben; J Dumont; V Gilliquet; P A Bolle; F Hilger
Journal:  Yeast       Date:  1991-07       Impact factor: 3.239

10.  The byp1-3 allele of the Saccharomyces cerevisiae GGS1/TPS1 gene and its multi-copy suppressor tRNA(GLN) (CAG): Ggs1/Tps1 protein levels restraining growth on fermentable sugars and trehalose accumulation.

Authors:  S Hohmann; P Van Dijck; K Luyten; J M Thevelein
Journal:  Curr Genet       Date:  1994-10       Impact factor: 3.886

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  8 in total

1.  Characterization of the Saccharomyces cerevisiae cyclic nucleotide phosphodiesterase involved in the metabolism of ADP-ribose 1",2"-cyclic phosphate.

Authors:  F Nasr; W Filipowicz
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  Characterization of a glucose-repressed pyruvate kinase (Pyk2p) in Saccharomyces cerevisiae that is catalytically insensitive to fructose-1,6-bisphosphate.

Authors:  E Boles; F Schulte; T Miosga; K Freidel; E Schlüter; F K Zimmermann; C P Hollenberg; J J Heinisch
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

3.  Identification of a UPC2 homolog in Saccharomyces cerevisiae and its involvement in aerobic sterol uptake.

Authors:  K V Shianna; W D Dotson; S Tove; L W Parks
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

4.  Isolation and characterization of the Saccharomyces cerevisiae XPT1 gene encoding xanthine phosphoribosyl transferase.

Authors:  M L Guetsova; T R Crother; M W Taylor; B Daignan-Fornier
Journal:  J Bacteriol       Date:  1999-05       Impact factor: 3.490

5.  Rapid depletion of mutant eukaryotic initiation factor 5A at restrictive temperature reveals connections to actin cytoskeleton and cell cycle progression.

Authors:  Ishita Chatterjee; Stephane R Gross; Terri Goss Kinzy; Kuang Yu Chen
Journal:  Mol Genet Genomics       Date:  2006-01-12       Impact factor: 3.291

6.  A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family.

Authors:  E L Braun; E K Fuge; P A Padilla; M Werner-Washburne
Journal:  J Bacteriol       Date:  1996-12       Impact factor: 3.490

7.  A mutation in a purported regulatory gene affects control of sterol uptake in Saccharomyces cerevisiae.

Authors:  J H Crowley; F W Leak; K V Shianna; S Tove; L W Parks
Journal:  J Bacteriol       Date:  1998-08       Impact factor: 3.490

8.  The functional expression of toxic genes: lessons learned from molecular cloning of CCH1, a high-affinity Ca2+ channel.

Authors:  Kiem Vu; Jennifer Bautos; Min-Pyo Hong; Angie Gelli
Journal:  Anal Biochem       Date:  2009-07-04       Impact factor: 3.365

  8 in total

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