Literature DB >> 7608626

Elucidation of primary radiation damage in DNA through application of ab initio molecular orbital theory.

A O Colson1, M D Sevilla.   

Abstract

This review summarizes the results of recent ab initio molecular orbital calculations performed on DNA constituents that attempt to further our understanding of the radiation-induced damage to DNA. The results reviewed include calculations performed on the four individual DNA bases, the base pairs in gas phase and modelled aqueous phase, the deoxyribose moiety, and a portion of the sugar-phosphate backbone. The emphasis is on the electron affinities and ionization potentials of the radical species calculated under various conditions (i.e. gas phase, aqueous phase, proton transfer, base stacking), as it has been shown that the initial ion radical distribution is largely a function of these two properties. Theoretical studies of the electronic excited states of the individual bases and radioprotection of the biomolecule by various thiol compounds are also reviewed. Finally, a summary is provided to allow for further elaboration of the current model for radiation damage to DNA and to show the present advantages and limitations of ab initio theory in the investigation of such processes.

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Year:  1995        PMID: 7608626     DOI: 10.1080/09553009514550751

Source DB:  PubMed          Journal:  Int J Radiat Biol        ISSN: 0955-3002            Impact factor:   2.694


  16 in total

1.  An investigation into the mechanisms of DNA strand breakage by direct ionization of variably hydrated plasmid DNA.

Authors:  Shubhadeep Purkayastha; Jamie R Milligan; William A Bernhard
Journal:  J Phys Chem B       Date:  2006-12-28       Impact factor: 2.991

2.  (G-H)*-C and G-(C-H)* radicals derived from the guanine.cytosine base pair cause DNA subunit lesions.

Authors:  Partha Pratim Bera; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

3.  Highly oxidizing excited states of one-electron-oxidized guanine in DNA: wavelength and pH dependence.

Authors:  Deepti Khanduri; Amitava Adhikary; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2011-03-07       Impact factor: 15.419

4.  One-electron oxidation of ds(5'-GGG-3') and ds(5'-G(8OG)G-3') and the nature of hole distribution: a density functional theory (DFT) study.

Authors:  Anil Kumar; Amitava Adhikary; Michael D Sevilla; David M Close
Journal:  Phys Chem Chem Phys       Date:  2020-02-19       Impact factor: 3.676

5.  Direct formation of the C5'-radical in the sugar-phosphate backbone of DNA by high-energy radiation.

Authors:  Amitava Adhikary; David Becker; Brian J Palmer; Alicia N Heizer; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2012-05-14       Impact factor: 2.991

6.  Electron transfer vs. proton transfer within radical-cation clusters of guanosine and deoxyguanosine with substituted naphthalenes and sinapinic acid.

Authors:  A Liguori; A Napoli; G Sindona
Journal:  J Am Soc Mass Spectrom       Date:  2001-02       Impact factor: 3.109

7.  Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 1. Preparation, dissociations, and energetics of 2-hydroxyoxolan-2-yl radical, neutral isomers, and cations.

Authors:  Shetty Vivekananda; Martin Sadílek; Xiaohong Chen; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

8.  Probing the interactions of the solvated electron with DNA by molecular dynamics simulations: bromodeoxyuridine substituted DNA.

Authors:  Tsvetan G Gantchev; Darel J Hunting
Journal:  J Mol Model       Date:  2008-04-15       Impact factor: 1.810

9.  Tautomeric equilibria in 8-oxopurines: implications for mutagenicity.

Authors:  D Venkateswarlu; J Leszczynski
Journal:  J Comput Aided Mol Des       Date:  1998-07       Impact factor: 3.686

10.  Photoexcitation of adenine cation radical [A*+] in the near UV-vis region produces sugar radicals in adenosine and in its nucleotides.

Authors:  Amitava Adhikary; Deepti Khanduri; Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2008-12-11       Impact factor: 2.991

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