Literature DB >> 15234364

Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 1. Preparation, dissociations, and energetics of 2-hydroxyoxolan-2-yl radical, neutral isomers, and cations.

Shetty Vivekananda1, Martin Sadílek, Xiaohong Chen, Frantisek Turecek.   

Abstract

Collisional neutralization of several isomeric C(4)H(7)O(2) cations is used to generate radicals that share some structural features with transient species that are thought to be produced by radiolysis of 2-deoxyribose. The title 2-hydroxyoxolan-2-yl radical (1) undergoes nearly complete dissociation when produced by femtosecond electron transfer from thermal organic electron donors dimethyl disulfide and N,N-dimethylaniline in the gas phase. Product analysis, isotope labeling ((2)H and (18)O), and potential energy surface mapping by ab initio calculations at the G2(MP2) and B3-PMP2 levels of theory and in combination with Rice-Ramsperger-Kassel-Marcus (RRKM) kinetic calculations are used to assign the major and some minor pathways for 1 dissociations. The major (approximately 90%) pathway is initiated by cleavage of the ring C-5[bond]O bond in 1 and proceeds to form ethylene and *CH(2)COOH as main products, whereas loss of a hydrogen atom forms 4-hexenoic acid as a minor product. Loss of the OH hydrogen atom forming butyrolactone (2, approximately 9%) and cleavage of the C-3[bond]C-4 bonds (<1%) in 1 are other minor pathways. The major source of excitation in 1 is by Franck-Condon effects that cause substantial differences between the adiabatic and vertical ionization of 1 (5.40 and 6.89 eV, respectively) and vertical recombination in the precursor ion 1(+) (4.46 eV). (+)NR(+) mass spectra distinguish radical 1 from isomeric radicals 2-oxo-(1H)oxolanium (3), 1,3-dioxan-2-yl (9), and 1,3-dioxan-4-yl (10) that were generated separately from their corresponding ion precursors.

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Year:  2004        PMID: 15234364     DOI: 10.1016/j.jasms.2004.03.017

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  9 in total

1.  Novel tandem quadrupole-acceleration-deceleration mass spectrometer for neutralization-reionization studies.

Authors:  F Turecek; M Gu; S A Shaffer
Journal:  J Am Soc Mass Spectrom       Date:  1992-07       Impact factor: 3.109

2.  Lactone enols are stable in the gas phase but highly unstable in solution.

Authors:  Frantisek Turecek; Shetty Vivekananda; Martin Sadílek; Miroslav Polásek
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

3.  Reactivity of substituted charged phenyl radicals toward components of nucleic acids.

Authors:  Luis E Ramírez-Arizmendi; Jenny L Heidbrink; Leonard P Guler; Hilkka I Kenttämaa
Journal:  J Am Chem Soc       Date:  2003-02-26       Impact factor: 15.419

4.  Gas-phase reactions of charged phenyl radicals with neutral biomolecules evaporated by laser-induced acoustic desorption.

Authors:  Christopher J Petzold; Luis E Ramírez-Arizmendi; Jenny L Heidbrink; James Pérez; Hilkka I Kenttämaa
Journal:  J Am Soc Mass Spectrom       Date:  2002-02       Impact factor: 3.109

5.  Lactone enol cation-radicals: gas-phase generation, structure, energetics, and reactivity of the ionized enol of butane-4-lactone.

Authors:  Frantisek Turecek; Shetty Vivekananda; Martin Sadílek; Miroslav Polásek
Journal:  J Mass Spectrom       Date:  2002-08       Impact factor: 1.982

6.  Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 2. Preparation, dissociations, and energetics of 3-hydroxyoxolan-3-yl radical and cation.

Authors:  Shetty Vivekananda; Martin Sadílek; Xiaohong Chen; Luke E Adams; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

Review 7.  Elucidation of primary radiation damage in DNA through application of ab initio molecular orbital theory.

Authors:  A O Colson; M D Sevilla
Journal:  Int J Radiat Biol       Date:  1995-06       Impact factor: 2.694

8.  Mechanism and energetics of intramolecular hydrogen transfer in amide and peptide radicals and cation-radicals.

Authors:  Frantisek Turecek; Erik A Syrstad
Journal:  J Am Chem Soc       Date:  2003-03-19       Impact factor: 15.419

Review 9.  Carbohydrate radicals: from ethylene glycol to DNA strand breakage.

Authors:  C von Sonntag
Journal:  Int J Radiat Biol Relat Stud Phys Chem Med       Date:  1984-11
  9 in total
  1 in total

1.  Modeling deoxyribose radicals by neutralization-reionization mass spectrometry. Part 2. Preparation, dissociations, and energetics of 3-hydroxyoxolan-3-yl radical and cation.

Authors:  Shetty Vivekananda; Martin Sadílek; Xiaohong Chen; Luke E Adams; Frantisek Turecek
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

  1 in total

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