Literature DB >> 21381665

Highly oxidizing excited states of one-electron-oxidized guanine in DNA: wavelength and pH dependence.

Deepti Khanduri1, Amitava Adhikary, Michael D Sevilla.   

Abstract

Excited states of one-electron-oxidized guanine in DNA are known to induce hole transfer to the sugar moiety and on deprotonation result in neutral sugar radicals that are precursors of DNA strand breaks. This work carried out in a homogeneous aqueous glass (7.5 M LiCl) at low temperatures (77-175 K) shows the extent of photoconversion of one-electron-oxidized guanine and the associated yields of individual sugar radicals are crucially controlled by the photon energy, protonation state, and strandedness of the oligomer. In addition to sugar radical formation, highly oxidizing excited states of one-electron-oxidized guanine are produced with 405 nm light at pH 5 and below that are able to oxidize chloride ion in the surrounding solution to form Cl(2)(•-) via an excited-state hole transfer process. Among the various DNA model systems studied in this work, the maximum amount of Cl(2)(•-) is produced with ds (double-stranded) DNA, where the one-electron-oxidized guanine exists in its cation radical form (G(•+):C). Thus, via excited-state hole transfer, the dsDNA is apparently able to protect itself from cation radical excited states by transfer of damage to the surrounding environment.

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Year:  2011        PMID: 21381665      PMCID: PMC3063320          DOI: 10.1021/ja110499a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  34 in total

1.  DNA-mediated charge transport requires conformational motion of the DNA bases: elimination of charge transport in rigid glasses at 77 K.

Authors:  Melanie A O'Neill; Jacqueline K Barton
Journal:  J Am Chem Soc       Date:  2004-10-20       Impact factor: 15.419

Review 2.  Damage to DNA and chromatin structure from ionizing radiations, and the radiation sensitivities of mammalian cells.

Authors:  J T Lett
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1990

3.  Prototropic equilibria in DNA containing one-electron oxidized GC: intra-duplex vs. duplex to solvent deprotonation.

Authors:  Amitava Adhikary; Anil Kumar; Shawn A Munafo; Deepti Khanduri; Michael D Sevilla
Journal:  Phys Chem Chem Phys       Date:  2010       Impact factor: 3.676

4.  (G-H)*-C and G-(C-H)* radicals derived from the guanine.cytosine base pair cause DNA subunit lesions.

Authors:  Partha Pratim Bera; Henry F Schaefer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

5.  Sugar radical formation by a proton coupled hole transfer in 2'-deoxyguanosine radical cation (2'-dG*+): a theoretical treatment.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

6.  Photoexcitation of dinucleoside radical cations: a time-dependent density functional study.

Authors:  Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2006-11-30       Impact factor: 2.991

7.  Effect of base sequence and deprotonation of Guanine cation radical in DNA.

Authors:  Kazuo Kobayashi; Ryuhei Yamagami; Seiichi Tagawa
Journal:  J Phys Chem B       Date:  2008-08-05       Impact factor: 2.991

8.  Photoexcitation of adenine cation radical [A*+] in the near UV-vis region produces sugar radicals in adenosine and in its nucleotides.

Authors:  Amitava Adhikary; Deepti Khanduri; Anil Kumar; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2008-12-11       Impact factor: 2.991

9.  Sugar radicals formed by photoexcitation of guanine cation radical in oligonucleotides.

Authors:  Amitava Adhikary; Sean Collins; Deepti Khanduri; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2007-06-05       Impact factor: 2.991

10.  UVA-visible photo-excitation of guanine radical cations produces sugar radicals in DNA and model structures.

Authors:  Amitava Adhikary; Aramice Y S Malkhasian; Sean Collins; Jessica Koppen; David Becker; Michael D Sevilla
Journal:  Nucleic Acids Res       Date:  2005-10-04       Impact factor: 16.971

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  18 in total

1.  Formation of S-Cl phosphorothioate adduct radicals in dsDNA S-oligomers: hole transfer to guanine vs disulfide anion radical formation.

Authors:  Amitava Adhikary; Anil Kumar; Brian J Palmer; Andrew D Todd; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2013-08-14       Impact factor: 15.419

2.  Prehydrated One-Electron Attachment to Azido-Modified Pentofuranoses: Aminyl Radical Formation, Rapid H-Atom Transfer, and Subsequent Ring Opening.

Authors:  Mukesh Mudgal; Sunny Rishi; Daniel A Lumpuy; Keaton A Curran; Kathryn Lynn Verley; Adam J Sobczak; Thao P Dang; Natasha Sulimoff; Anil Kumar; Michael D Sevilla; Stanislaw F Wnuk; Amitava Adhikary
Journal:  J Phys Chem B       Date:  2017-05-03       Impact factor: 2.991

3.  Hydroxyl ion addition to one-electron oxidized thymine: unimolecular interconversion of C5 to C6 OH-adducts.

Authors:  Amitava Adhikary; Anil Kumar; Alicia N Heizer; Brian J Palmer; Venkata Pottiboyina; Yong Liang; Stanislaw F Wnuk; Michael D Sevilla
Journal:  J Am Chem Soc       Date:  2013-02-14       Impact factor: 15.419

4.  One Way Traffic: Base-to-Backbone Hole Transfer in Nucleoside Phosphorodithioate.

Authors:  Renata Kaczmarek; Samuel Ward; Dipra Debnath; Taisiya Jacobs; Alexander D Stark; Dariusz Korczyński; Anil Kumar; Michael D Sevilla; Sergey A Denisov; Viacheslav Shcherbakov; Pascal Pernot; Mehran Mostafavi; Roman Dembinski; Amitava Adhikary
Journal:  Chemistry       Date:  2020-06-09       Impact factor: 5.236

5.  Direct formation of the C5'-radical in the sugar-phosphate backbone of DNA by high-energy radiation.

Authors:  Amitava Adhikary; David Becker; Brian J Palmer; Alicia N Heizer; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2012-05-14       Impact factor: 2.991

6.  5-Thiocyanato-2'-deoxyuridine as a possible radiosensitizer: electron-induced formation of uracil-C5-thiyl radical and its dimerization.

Authors:  Magdalena Zdrowowicz; Lidia Chomicz; Michał Żyndul; Paweł Wityk; Janusz Rak; Tyler J Wiegand; Cameron G Hanson; Amitava Adhikary; Michael D Sevilla
Journal:  Phys Chem Chem Phys       Date:  2015-07-14       Impact factor: 3.676

7.  Modulating the Catalytic Activity of Cerium Oxide Nanoparticles with the Anion of the Precursor Salt.

Authors:  Swetha Barkam; Julian Ortiz; Shashank Saraf; Nicholas Eliason; Rameech Mccormack; Soumen Das; Ankur Gupta; Craig Neal; Alex Petrovici; Cameron Hanson; Michael D Sevilla; Amitava Adhikary; Sudipta Seal
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-08-21       Impact factor: 4.126

8.  Gamma and Ion-Beam Irradiation of DNA: Free Radical Mechanisms, Electron Effects, and Radiation Chemical Track Structure.

Authors:  Michael D Sevilla; David Becker; Anil Kumar; Amitava Adhikary
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2016-04-30       Impact factor: 2.858

9.  Reactions of 5-methylcytosine cation radicals in DNA and model systems: thermal deprotonation from the 5-methyl group vs. excited state deprotonation from sugar.

Authors:  Amitava Adhikary; Anil Kumar; Brian J Palmer; Andrew D Todd; Alicia N Heizer; Michael D Sevilla
Journal:  Int J Radiat Biol       Date:  2014-02-10       Impact factor: 2.694

10.  π-Radical to σ-Radical Tautomerization in One-Electron-Oxidized 1-Methylcytosine and Its Analogs.

Authors:  Amitava Adhikary; Anil Kumar; Casandra T Bishop; Tyler J Wiegand; Ragda M Hindi; Ananya Adhikary; Michael D Sevilla
Journal:  J Phys Chem B       Date:  2015-08-13       Impact factor: 2.991

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