Literature DB >> 7521527

tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis.

C Ushida1, H Himeno, T Watanabe, A Muto.   

Abstract

The stable RNAs, whose sequences are homologous to 10Sa RNA of Escherichia coli, have been isolated from Mycoplasma capricolum and Bacillus subtilis, both belonging to the Gram-positive bacterial group. The total nucleotide sequences of the RNAs have been determined by partial RNA sequencing and DNA sequencing of their genes. A comparison of the sequences, together with those of other bacterial 10Sa RNAs so far known, has shown that the 5'- and 3'-end sequences are well conserved among species, while the central parts reveal little homologies. Unexpectedly, the conserved 5'- and 3'-regions can be folded in a common tRNA-like structure containing an amino acid-acceptor stem and a T phi C-stem/loop. The 3'-terminal CCA sequence of B.subtilis 10Sa RNA is not encoded on the DNA, but is added after transcription. Furthermore, the RNA is aminoacylatable with alanine in vitro, and binds to the 70S ribosome in vivo.

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Year:  1994        PMID: 7521527      PMCID: PMC523734          DOI: 10.1093/nar/22.16.3392

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

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Authors:  B S Vold
Journal:  Microbiol Rev       Date:  1985-03

2.  Aminoacylation of RNA minihelices with alanine.

Authors:  C Francklyn; P Schimmel
Journal:  Nature       Date:  1989-02-02       Impact factor: 49.962

3.  The RNA component of the Bacillus subtilis RNase P. Sequence, activity, and partial secondary structure.

Authors:  C Reich; K J Gardiner; G J Olsen; B Pace; T L Marsh; N R Pace
Journal:  J Biol Chem       Date:  1986-06-15       Impact factor: 5.157

4.  Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

Authors:  W H McClain; K Foss
Journal:  Science       Date:  1988-05-06       Impact factor: 47.728

5.  Role of the extra G-C pair at the end of the acceptor stem of tRNA(His) in aminoacylation.

Authors:  H Himeno; T Hasegawa; T Ueda; K Watanabe; K Miura; M Shimizu
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

6.  A simple structural feature is a major determinant of the identity of a transfer RNA.

Authors:  Y M Hou; P Schimmel
Journal:  Nature       Date:  1988-05-12       Impact factor: 49.962

7.  Phy M: an RNase activity specific for U and A residues useful in RNA sequence analysis.

Authors:  H Donis-Keller
Journal:  Nucleic Acids Res       Date:  1980-07-25       Impact factor: 16.971

8.  Small stable RNAs in Mycoplasma capricolum.

Authors:  C Ushida; A Muto
Journal:  Nucleic Acids Symp Ser       Date:  1993

9.  Characterization of 10S RNA: a new stable rna molecule from Escherichia coli.

Authors:  B K Ray; D Apirion
Journal:  Mol Gen Genet       Date:  1979-07-02

10.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

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  51 in total

1.  Phylogenetic analysis of tmRNA genes within a bacterial subgroup reveals a specific structural signature.

Authors:  B Felden; C Massire; E Westhof; J F Atkins; R F Gesteland
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

2.  Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging.

Authors:  K Hanawa-Suetsugu; V Bordeau; H Himeno; A Muto; B Felden
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

3.  Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro.

Authors:  S Lee; M Ishii; T Tadaki; A Muto; H Himeno
Journal:  RNA       Date:  2001-07       Impact factor: 4.942

4.  Structure of small protein B: the protein component of the tmRNA-SmpB system for ribosome rescue.

Authors:  Gang Dong; Jacek Nowakowski; David W Hoffman
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

5.  SmpB functions in various steps of trans-translation.

Authors:  Kyoko Hanawa-Suetsugu; Mitsuru Takagi; Hachiro Inokuchi; Hyouta Himeno; Akira Muto
Journal:  Nucleic Acids Res       Date:  2002-04-01       Impact factor: 16.971

6.  TmRNA is required for correct timing of DNA replication in Caulobacter crescentus.

Authors:  Kenneth C Keiler; Lucy Shapiro
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

7.  BRUCE: a program for the detection of transfer-messenger RNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback; Siv Andersson
Journal:  Nucleic Acids Res       Date:  2002-08-01       Impact factor: 16.971

8.  A third lineage with two-piece tmRNA.

Authors:  Stephen M Sharkady; Kelly P Williams
Journal:  Nucleic Acids Res       Date:  2004-08-23       Impact factor: 16.971

9.  Role of the C-terminal tail of SmpB in the early stage of trans-translation.

Authors:  Daisuke Kurita; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2010-03-26       Impact factor: 4.942

10.  Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome.

Authors:  Sukhjit Kaur; Reynald Gillet; Wen Li; Richard Gursky; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-20       Impact factor: 11.205

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