Literature DB >> 7520291

Noise analysis of ion current through the open and the sugar-induced closed state of the LamB channel of Escherichia coli outer membrane: evaluation of the sugar binding kinetics to the channel interior.

S Nekolla1, C Andersen, R Benz.   

Abstract

LamB, a sugar-specific channel of Escherichia coli outer membrane was reconstituted into lipid bilayer membranes and the current noise was investigated using fast Fourier transformation. The current noise through the open channels had a rather small spectral density, which was a function of the inverse frequency up to about 100 Hz. The spectral density of the noise of the open LamB channels was a quadratic function of the applied voltage. Its magnitude was not correlated to the number of channels in the lipid bilayer membrane. Upon addition of sugars to the aqueous phase the current decreased in a dose-dependent manner. Simultaneously, the spectral density of the current noise increased drastically, which indicated interaction of the sugars with the binding site inside the channel. The frequency dependence of the spectral density was of Lorentzian type, although the power of its frequency dependence was not identical to -2. Analysis of the power density spectra using a previously proposed simple model (Benz, R., A. Schmid, and G. H. Vos-Scheperkeuter. 1987. J. Membr. Biol. 100: 12-29), allowed the evaluation of the on- and the off-rate constants for the maltopentaose binding to the binding site inside the LamB channels. This means also that the maltopentaose flux through the LamB channel could be estimated by assuming a simple one-site, two-barrier model for the sugar transport from the results of the noise analysis.

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Year:  1994        PMID: 7520291      PMCID: PMC1275859          DOI: 10.1016/S0006-3495(94)80929-4

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  Brief closures of gramicidin A channels in lipid bilayer membranes.

Authors:  A Ring
Journal:  Biochim Biophys Acta       Date:  1986-04-25

2.  Interpretation of 1/f fluctuations in ion conducting membranes.

Authors:  R Sauvé; G Szabo
Journal:  J Theor Biol       Date:  1985-04-07       Impact factor: 2.691

Review 3.  Structure and function of porins from gram-negative bacteria.

Authors:  R Benz
Journal:  Annu Rev Microbiol       Date:  1988       Impact factor: 15.500

4.  Open channel noise. III. High-resolution recordings show rapid current fluctuations in gramicidin A and four chemical analogues.

Authors:  F J Sigworth; D W Urry; K U Prasad
Journal:  Biophys J       Date:  1987-12       Impact factor: 4.033

5.  Selectivity for maltose and maltodextrins of maltoporin, a pore-forming protein of E. coli outer membrane.

Authors:  B Dargent; J Rosenbusch; F Pattus
Journal:  FEBS Lett       Date:  1987-08-10       Impact factor: 4.124

6.  Mechanism of sugar transport through the sugar-specific LamB channel of Escherichia coli outer membrane.

Authors:  R Benz; A Schmid; G H Vos-Scheperkeuter
Journal:  J Membr Biol       Date:  1987       Impact factor: 1.843

7.  Antigenic polymorphism of the LamB protein among members of the family Enterobacteriaceae.

Authors:  M A Bloch; C Desaymard
Journal:  J Bacteriol       Date:  1985-07       Impact factor: 3.490

8.  Pore-forming activity of the Tsx protein from the outer membrane of Escherichia coli. Demonstration of a nucleoside-specific binding site.

Authors:  C Maier; E Bremer; A Schmid; R Benz
Journal:  J Biol Chem       Date:  1988-02-15       Impact factor: 5.157

9.  Three-dimensional reconstruction of maltoporin from electron microscopy and image processing.

Authors:  J Lepault; B Dargent; W Tichelaar; J P Rosenbusch; K Leonard; F Pattus
Journal:  EMBO J       Date:  1988-01       Impact factor: 11.598

10.  Mechanism of ion transport through the anion-selective channel of the Pseudomonas aeruginosa outer membrane.

Authors:  R Benz; R E Hancock
Journal:  J Gen Physiol       Date:  1987-02       Impact factor: 4.086

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  29 in total

1.  On translocation through a membrane channel via an internal binding site: kinetics and voltage dependence.

Authors:  Gerhard Schwarz; Christophe Danelon; Mathias Winterhalter
Journal:  Biophys J       Date:  2003-05       Impact factor: 4.033

2.  Protein translocation through Tom40: kinetics of peptide release.

Authors:  Kozhinjampara R Mahendran; Mercedes Romero-Ruiz; Andrea Schlösinger; Mathias Winterhalter; Stephan Nussberger
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

3.  Noise in solid-state nanopores.

Authors:  R M M Smeets; U F Keyser; N H Dekker; C Dekker
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-09       Impact factor: 11.205

4.  Relaxation and fluctuations of the number of particles in a membrane channel at arbitrary particle-channel interaction.

Authors:  Vladimir Yu Zitserman; Alexander M Berezhkovskii; Mark A Pustovoit; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2008-09-07       Impact factor: 3.488

5.  Transport of maltodextrins through maltoporin: a single-channel study.

Authors:  Lisen Kullman; Mathias Winterhalter; Sergey M Bezrukov
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

6.  Dynamics of nucleotides in VDAC channels: structure-specific noise generation.

Authors:  Tatiana K Rostovtseva; Alexander Komarov; Sergey M Bezrukov; Marco Colombini
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

7.  Bridging timescales and length scales: from macroscopic flux to the molecular mechanism of antibiotic diffusion through porins.

Authors:  Eric Hajjar; Kozhinjampara R Mahendran; Amit Kumar; Andrey Bessonov; Mircea Petrescu; Helge Weingart; Paolo Ruggerone; Mathias Winterhalter; Matteo Ceccarelli
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

Review 8.  Controlling molecular transport through nanopores.

Authors:  Ulrich F Keyser
Journal:  J R Soc Interface       Date:  2011-06-29       Impact factor: 4.118

9.  ATP transport through a single mitochondrial channel, VDAC, studied by current fluctuation analysis.

Authors:  T K Rostovtseva; S M Bezrukov
Journal:  Biophys J       Date:  1998-05       Impact factor: 4.033

10.  Protein reconstitution into freestanding planar lipid membranes for electrophysiological characterization.

Authors:  Thomas Gutsmann; Thomas Heimburg; Ulrich Keyser; Kozhinjampara R Mahendran; Mathias Winterhalter
Journal:  Nat Protoc       Date:  2014-12-31       Impact factor: 13.491

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