Literature DB >> 7517556

On producing more complexity than entropy in replication.

B K Davis1.   

Abstract

RNA replication in the bacteriophage Q beta system can, in principle, transmit sequence complexity at a higher rate than it increases entropy. Expanding the variety of nucleotides, through novel base-pair interactions, would move the threshold at which synthesis produces more complexity than entropy away from near equilibrium while accelerating the system approach to equilibrium. A decrease in sequence complexity during polymerization, leading to a many-to-one monomer correspondence with template, cannot be reversed, owing to symmetry restrictions. In terms of the kinetic mechanism, uncertainty associated with the the path of depolymerization yields a path entropy which selectively prolongs the reverse reaction. Together with an elevation in thermodynamic entropy, therefore, there are two possible sources of irreversibility in a physical process. Some implications of kinetic irreversibility are considered in relation to the second law of thermodynamics and to the processing and translation of mRNA.

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Year:  1994        PMID: 7517556      PMCID: PMC44258          DOI: 10.1073/pnas.91.14.6639

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

1.  What is the optimum size for the genetic alphabet?

Authors:  E Szathmáry
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

2.  The proportion of revertant and mutant phage in a growing population, as a function of mutation and growth rate.

Authors:  E Batschelet; E Domingo; C Weissmann
Journal:  Gene       Date:  1976       Impact factor: 3.688

Review 3.  Molecular replication.

Authors:  L E Orgel
Journal:  Nature       Date:  1992-07-16       Impact factor: 49.962

4.  Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet.

Authors:  J A Piccirilli; T Krauch; S E Moroney; S A Benner
Journal:  Nature       Date:  1990-01-04       Impact factor: 49.962

5.  Thermal renaturation of deoxyribonucleic acids.

Authors:  J MARMUR; P DOTY
Journal:  J Mol Biol       Date:  1961-10       Impact factor: 5.469

6.  Algorithmic randomness and physical entropy.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1989-10-15

7.  Kinetics of renaturation of DNA.

Authors:  J G Wetmur; N Davidson
Journal:  J Mol Biol       Date:  1968-02-14       Impact factor: 5.469

8.  Chain propagation and polypeptide polymerization rate.

Authors:  B K Davis
Journal:  J Theor Biol       Date:  1971-01       Impact factor: 2.691

9.  Complexity transmission during replication.

Authors:  B K Davis
Journal:  Proc Natl Acad Sci U S A       Date:  1979-05       Impact factor: 11.205

10.  Rate of polymer formation and entropy production during competitive replication.

Authors:  B K Davis
Journal:  J Mol Evol       Date:  1978-02-21       Impact factor: 2.395

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