Literature DB >> 7501471

Two group I introns with a C.G basepair at the 5' splice-site instead of the very highly conserved U.G basepair: is selection post-translational?

M Hur1, R B Waring.   

Abstract

In virtually all of the 200 group I introns sequenced thus far, the specificity of 5' splice-site cleavage is determined by a basepair between a uracil base at the end of the 5' exon and a guanine in an intron guide sequence which pairs with the nucleotides flanking the splice-site. It has been reported that two introns in the cytochrome oxidase subunit I gene of Aspergillus nidulans and Podospora anserina are exceptions to this rule and have a C.G basepair in this position. We have confirmed the initial reports and shown for one of them that RNA editing does not convert the C to a U. Both introns autocatalytically cleave the 5' splice-site. Mutation of the C to U in one intron reduces the requirement for Mg2+ and leads to an increase in the rate of cleavage. As the C base encodes a highly conserved amino acid, we propose that it is selected post-translationally at the level of protein function, despite its inferior splicing activity.

Entities:  

Mesh:

Substances:

Year:  1995        PMID: 7501471      PMCID: PMC307405          DOI: 10.1093/nar/23.21.4466

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  22 in total

Review 1.  Group I introns: do they only go home?

Authors:  C Scazzocchio
Journal:  Trends Genet       Date:  1989-06       Impact factor: 11.639

2.  Characterization of an inducible expression system in Aspergillus nidulans using alcA and tubulin-coding genes.

Authors:  R B Waring; G S May; N R Morris
Journal:  Gene       Date:  1989-06-30       Impact factor: 3.688

3.  Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns.

Authors:  F H Allain; G Varani
Journal:  Nucleic Acids Res       Date:  1995-02-11       Impact factor: 16.971

4.  Making ends meet: a model for RNA splicing in fungal mitochondria.

Authors:  R W Davies; R B Waring; J A Ray; T A Brown; C Scazzocchio
Journal:  Nature       Date:  1982-12-23       Impact factor: 49.962

5.  Autocatalytic activities of intron 5 of the cob gene of yeast mitochondria.

Authors:  S Partono; A S Lewin
Journal:  Mol Cell Biol       Date:  1988-06       Impact factor: 4.272

6.  A tertiary interaction in the Tetrahymena intron contributes to selection of the 5' splice site.

Authors:  W D Downs; T R Cech
Journal:  Genes Dev       Date:  1994-05-15       Impact factor: 11.361

7.  Comparison of fungal mitochondrial introns reveals extensive homologies in RNA secondary structure.

Authors:  F Michel; A Jacquier; B Dujon
Journal:  Biochimie       Date:  1982-10       Impact factor: 4.079

Review 8.  RNA editing in plant mitochondria and chloroplasts.

Authors:  M W Gray; P S Covello
Journal:  FASEB J       Date:  1993-01       Impact factor: 5.191

9.  Three variant introns of the same general class in the mitochondrial gene for cytochrome oxidase subunit 1 in Aspergillus nidulans.

Authors:  R B Waring; T A Brown; J A Ray; C Scazzocchio; R W Davies
Journal:  EMBO J       Date:  1984-09       Impact factor: 11.598

10.  The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans.

Authors:  B F Lang
Journal:  EMBO J       Date:  1984-09       Impact factor: 11.598

View more
  5 in total

Review 1.  The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

Authors:  G Varani; W H McClain
Journal:  EMBO Rep       Date:  2000-07       Impact factor: 8.807

2.  A protein encoded by a group I intron in Aspergillus nidulans directly assists RNA splicing and is a DNA endonuclease.

Authors:  Y Ho; S J Kim; R B Waring
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

3.  De novo tertiary structure prediction using RNA123--benchmarking and application to Macugen.

Authors:  Emma S E Eriksson; Lokesh Joshi; Martin Billeter; Leif A Eriksson
Journal:  J Mol Model       Date:  2014-08-10       Impact factor: 1.810

4.  Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos.

Authors:  E M Denovan-Wright; A M Nedelcu; R W Lee
Journal:  Plant Mol Biol       Date:  1998-01       Impact factor: 4.076

Review 5.  The p53 mRNA: an integral part of the cellular stress response.

Authors:  Lucia Haronikova; Vanesa Olivares-Illana; Lixiao Wang; Konstantinos Karakostis; Sa Chen; Robin Fåhraeus
Journal:  Nucleic Acids Res       Date:  2019-04-23       Impact factor: 16.971

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.