Literature DB >> 11256617

The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems.

G Varani1, W H McClain.   

Abstract

The G x U wobble base pair is a fundamental unit of RNA secondary structure that is present in nearly every class of RNA from organisms of all three phylogenetic domains. It has comparable thermodynamic stability to Watson-Crick base pairs and is nearly isomorphic to them. Therefore, it often substitutes for G x C or A x U base pairs. The G x U wobble base pair also has unique chemical, structural, dynamic and ligand-binding properties, which can only be partially mimicked by Watson-Crick base pairs or other mispairs. These features mark sites containing G x U pairs for recognition by proteins and other RNAs and allow the wobble pair to play essential functional roles in a remarkably wide range of biological processes.

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Year:  2000        PMID: 11256617      PMCID: PMC1083677          DOI: 10.1093/embo-reports/kvd001

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  46 in total

1.  Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing.

Authors:  J A McDowell; D H Turner
Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

2.  Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition.

Authors:  A Ramos; G Varani
Journal:  Nucleic Acids Res       Date:  1997-06-01       Impact factor: 16.971

3.  Core sequences and a cleavage site wobble pair required for HDV antigenomic ribozyme self-cleavage.

Authors:  A T Perrotta; M D Been
Journal:  Nucleic Acids Res       Date:  1996-04-01       Impact factor: 16.971

4.  Catalytic role of 2'-hydroxyl groups within a group II intron active site.

Authors:  D L Abramovitz; R A Friedman; A M Pyle
Journal:  Science       Date:  1996-03-08       Impact factor: 47.728

5.  Small RNA-divalent domains.

Authors:  J Ciesiolka; M Yarus
Journal:  RNA       Date:  1996-08       Impact factor: 4.942

6.  Metal-binding sites in the major groove of a large ribozyme domain.

Authors:  J H Cate; J A Doudna
Journal:  Structure       Date:  1996-10-15       Impact factor: 5.006

7.  An RNA structure involved in feedback regulation of splicing and of translation is critical for biological fitness.

Authors:  B Li; J Vilardell; J R Warner
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

8.  Exocyclic amine of the conserved G.U pair at the cleavage site of the Tetrahymena ribozyme contributes to 5'-splice site selection and transition state stabilization.

Authors:  S A Strobel; T R Cech
Journal:  Biochemistry       Date:  1996-01-30       Impact factor: 3.162

9.  Antideterminants present in minihelix(Sec) hinder its recognition by prokaryotic elongation factor Tu.

Authors:  J Rudinger; R Hillenbrandt; M Sprinzl; R Giegé
Journal:  EMBO J       Date:  1996-02-01       Impact factor: 11.598

10.  Functional evidence for indirect recognition of G.U in tRNA(Ala) by alanyl-tRNA synthetase.

Authors:  K Gabriel; J Schneider; W H McClain
Journal:  Science       Date:  1996-01-12       Impact factor: 47.728

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  184 in total

Review 1.  Disease-related versus polymorphic mutations in human mitochondrial tRNAs. Where is the difference?

Authors:  C Florentz; M Sissler
Journal:  EMBO Rep       Date:  2001-06       Impact factor: 8.807

2.  Specific cleavage of hyper-edited dsRNAs.

Authors:  A D Scadden; C W Smith
Journal:  EMBO J       Date:  2001-08-01       Impact factor: 11.598

3.  The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism.

Authors:  L Moulinier; S Eiler; G Eriani; J Gangloff; J C Thierry; K Gabriel; W H McClain; D Moras
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

4.  Geometric nomenclature and classification of RNA base pairs.

Authors:  N B Leontis; E Westhof
Journal:  RNA       Date:  2001-04       Impact factor: 4.942

5.  A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA.

Authors:  Jean-Marc Lanchy; John D Ivanovitch; J Stephen Lodmell
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

6.  3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

Authors:  Xiang-Jun Lu; Wilma K Olson
Journal:  Nucleic Acids Res       Date:  2003-09-01       Impact factor: 16.971

7.  Degenerate in vitro genetic selection reveals mutations that diminish alfalfa mosaic virus RNA replication without affecting coat protein binding.

Authors:  Gail Rocheleau; Jessica Petrillo; Laura Guogas; Lee Gehrke
Journal:  J Virol       Date:  2004-08       Impact factor: 5.103

8.  Structure-function analysis of tRNA(Gln) in an Escherichia coli knockout strain.

Authors:  William H McClain; Kay Gabriel; Dennis Lee; Sharee Otten
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

9.  Role of wobble base pair geometry for codon degeneracy: purine-type bases at the anticodon wobble position.

Authors:  Gunajyoti Das; R H Duncan Lyngdoh
Journal:  J Mol Model       Date:  2012-03-08       Impact factor: 1.810

10.  Identification and characterization of anion binding sites in RNA.

Authors:  Jeffrey S Kieft; Elaine Chase; David A Costantino; Barbara L Golden
Journal:  RNA       Date:  2010-04-21       Impact factor: 4.942

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